Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3109 84.2 2e-11 seq779 82.4 6e-11 >seq3109 Length=11437 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||||| |||||||| || | || || || | || || Sbjct 9423 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA-AAGGGTGCGTCCATCTTC 9365 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || | || | ||| |||||||| || | | ||||||||| Sbjct 9364 GAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTG 9305 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | |||||||| | || || ||||| || |||||||| Sbjct 9304 GATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTT 9245 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||| ||||| || || |||||||| Sbjct 9244 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 9215 >seq779 Length=13020 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||||||||||| |||||||||||||||| | || | ||||| Sbjct 3160 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 3101 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || || ||||| || ||| || | || |||||||| Sbjct 3100 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 3041 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | |||||||| | || ||| || | ||| ||||| || Sbjct 3040 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 2981 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| || || || |||||||| Sbjct 2980 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 2951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421232686799606