Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq200 118 2e-22
seq2218 113 7e-21
>seq200
Length=6725
Score = 118 bits (130), Expect = 2e-22
Identities = 87/99 (88%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||| |||| |||||| |||||||||||||| ||||| ||||| |||||
Sbjct 3559 GCTAAGCGTCATCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCTAT 3617
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| ||||||||||| || ||||||||| ||||
Sbjct 3618 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 3656
>seq2218
Length=27763
Score = 113 bits (124), Expect = 7e-21
Identities = 86/99 (87%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||| ||| |||| | | |||| ||||||||||| |||||||||||||||||
Sbjct 20914 GCTAAGCGTCACCGCAAGAT-TTTGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 20972
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 20973 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 21011
Score = 105 bits (116), Expect = 1e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| |
Sbjct 21125 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 21184
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || ||||| || || ||||| |||||||||||| | || ||||||| |
Sbjct 21185 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 21244
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | || || |||||||||| |||| ||||| || ||||
Sbjct 21245 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 21287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79071903008958
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |