Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 269 3e-67
seq3071 107 2e-18
>seq1816
Length=7458
Score = 269 bits (298), Expect = 3e-67
Identities = 1144/1780 (64%), Gaps = 43/1780 (2%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489
Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309
Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250
Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 6249 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191
Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589
||| || || || | | || ||| | || || || || |
Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131
Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62647
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 6130 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073
Query 62648 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 62705
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 6016
Query 62706 -ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 6015 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 5957
Query 62765 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 5956 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 5897
Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACA 62879
||| |||| || || | || || | ||||| | || | ||| || | ||
Sbjct 5896 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 5837
Query 62880 AACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937
| ||||| || |||| || |||| ||||| || || |||| | | | |
Sbjct 5836 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 5777
Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997
||| | || || ||||| | ||| | || || || | || | ||| || |
Sbjct 5776 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 5717
Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057
|||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| |
Sbjct 5716 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 5657
Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCT 63113
| | ||| | | ||| | | | || || || | || | || || | ||||
Sbjct 5656 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCT 5597
Query 63114 CTT---TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170
| | || |||| | | | ||| |||||||| || | |||| |||| |||
Sbjct 5596 CATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCA 5544
Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230
|||||||||| || ||||| | | ||| || ||| | | || || ||||| |||
Sbjct 5543 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 5484
Query 63231 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
||||| |||||||| | || ||| || ||||| | || | ||| || || ||
Sbjct 5483 AGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 5425
Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349
|||||| || || |||||| | | || ||| | ||||| || || | || | ||
Sbjct 5424 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 5365
Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409
| | ||||| || |||||||| || || || | ||||||||| |||||||| ||||
Sbjct 5364 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAAC 5305
Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469
|| | ||| || | || ||||| || |||| |||||||||| ||| || ||| |
Sbjct 5304 TCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 5245
Query 63470 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529
|||||| || | ||| ||||| || || || || |||||||||| | || ||
Sbjct 5244 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 5185
Query 63530 TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589
| || | || ||||| ||||| || || ||||| || |||| | || || || ||
Sbjct 5184 TGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCA 5125
Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649
|| | || | || || || || | ||||| || ||||| || ||
Sbjct 5124 TGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 5065
Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63708
|||| | || | || ||||| |||||||| || || ||||| || | ||||
Sbjct 5064 GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAA 5006
Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
| || || || |||||||| | ||| ||||| || | |||
Sbjct 5005 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4966
>seq3071
Length=13184
Score = 107 bits (118), Expect = 2e-18
Identities = 573/919 (62%), Gaps = 65/919 (7%)
Strand=Plus/Plus
Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056
|| |||||| || || ||||| ||||| || | || ||||| || || || || ||
Sbjct 5372 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 5431
Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116
| | | || || || |||||||| || || || |||| | || || | || |
Sbjct 5432 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGT- 5490
Query 33117 TCCCAATTCAGAA-ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCA 33174
| |||| || | | | ||| |||||||| || || ||| ||||||| |||
Sbjct 5491 TACCAAGAGCGACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCG 5550
Query 33175 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 33234
| ||||| || | |||| | ||||||||| | || | ||||||||||| ||
Sbjct 5551 CG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCA 5609
Query 33235 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTA 33294
|| || ||||| || | | | || | | | || || | ||| || ||
Sbjct 5610 ACAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAG 5669
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|| | | || ||||| ||| || ||||| || || | || || || |||||
Sbjct 5670 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 5729
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| ||||| || | ||| | ||||||||| || ||||| || || |||||||||||||||
Sbjct 5730 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 5789
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 33471
|||||||| || || || |||||||| |||| || | || || | | |
Sbjct 5790 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 5849
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG----------- 33520
|||| || ||||| | |||||| ||||| ||||| || | ||||
Sbjct 5850 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGTAGAG 5909
Query 33521 -------------GCATCGTT---------------------------TCTATGGCATTA 33540
|||| ||| || || |||||
Sbjct 5910 ATAGTTAGGAAATGCATTGTTTAGACCAATGAATGTGACTCACTTGTCTCAATTGCATTG 5969
Query 33541 AAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599
|||||||| ||| || | | || |||| || |||||||| | ||| || |
Sbjct 5970 AAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGATGAGGAGAGAGTATGT 6028
Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659
||| || || ||||| || || || || || |||||||| || | |||||||| ||
Sbjct 6029 TTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGAT 6088
Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719
|| ||||| || || || || | | || || || ||||||||||| |||||
Sbjct 6089 TTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGC 6148
Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TGGTGTTAGTTTATTCC 33775
|| || || | || || || ||||| || || | | ||| | |||||||
Sbjct 6149 GAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATTGAGTTTG-TTATTCC 6207
Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
|||| | | || || || | || | ||||| ||||||| || |||||||| ||||
Sbjct 6208 AATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCT 6267
Query 33836 TTTTATACATGTTCCAGAT 33854
|||| ||||| | ||||||
Sbjct 6268 TTTTGTACATTTGCCAGAT 6286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622919120654960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |