Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 320 4e-82
seq3069 98.7 3e-15
>seq1816
Length=7458
Score = 320 bits (354), Expect = 4e-82
Identities = 1163/1793 (65%), Gaps = 48/1793 (3%)
Strand=Plus/Plus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| |||
Sbjct 4909 TTCGGATTCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAA 4968
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
|| || ||||| ||| | ||||||||||| ||||||| || | ||| | || |
Sbjct 4969 CGTCCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGC 5028
Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568
|| ||||| || || || ||| | || | | || ||||| |||||| | || |||
Sbjct 5029 GCCATTGAGACCTACAACCTTAT--GTCCAACAAATACTTCACACACGCCTCCCCTACAC 5086
Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628
| | | ||||| || | | ||||| | || || ||||| || | | |||||||
Sbjct 5087 TTTTCTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGG 5146
Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688
| ||| || || ||||| | ||| || || |||| |||||| | || || || ||||
Sbjct 5147 AGGATAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATG 5206
Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746
| || || |||||| | || |||| | ||||| || | || ||||| |||
Sbjct 5207 CTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCA--TACATCGCCGG 5264
Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806
|| || |||| || || | || || ||||| || || || | || ||||| ||
Sbjct 5265 TACCAACGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAG 5324
Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866
||||||||||| |||||| ||||| || || ||||| | ||||| ||||||
Sbjct 5325 ATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTG 5384
Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926
|| || ||| |||| ||||| || || ||||| || ||| || || || ||| | ||
Sbjct 5385 GCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCG 5444
Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG--AG 363984
|| |||||||| |||||||| | ||| || | || | || |||||||| || | |
Sbjct 5445 CGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAA 5504
Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044
| | | | ||||| |||| | ||||| | |||||||| || | | |||||||
Sbjct 5505 GAACG--CGGATTGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATAT 5562
Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104
|| ||||| | || ||||| || || | ||||| ||| || | | ||| |||||
Sbjct 5563 GGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACC 5622
Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164
|| || || ||||| |||| |||| | || | || | |||||| |||| ||
Sbjct 5623 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCA 5682
Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224
| ||| | ||||| ||| | |||||| ||| |||||| || |||| || || |||
Sbjct 5683 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 5742
Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283
| |||| ||| | || || || ||| | |||||| | || || || || ||
Sbjct 5743 C-GCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTG 5801
Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTGA 364337
|||||| | || || || || || || | |||| | || || || |||| ||
Sbjct 5802 CTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAGGGAACTTACGA 5861
Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG---CAATCTCG-ACAAGGTTA 364393
||| | ||| | || || || ||| | | ||| || || | ||||| | |
Sbjct 5862 TTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGAAACTTGAACAAGATCA 5917
Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCG 364452
| |||| || || || || | || || ||| || | | ||| | |||||||| ||
Sbjct 5918 TTGACATCAACTACTACCCCGTCCCAGAGGCCAGAAAGAGC-AATTTCCGTCATCGACCT 5976
Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGA-TGGCATTTG 364510
|| | | | ||||| || || || || || | |||| || |||| || | ||||||
Sbjct 5977 ATCGCTGTCGGTGTTCAAGGTCTTGCCGATGCTTTTTTG--GCTCTTCGATTACCATTTG 6034
Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570
| || ||||| || || || | | ||||| ||||| || || || ||
Sbjct 6035 AATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCTT 6094
Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630
|||| | || ||| | || || ||| | || || || || || || |
Sbjct 6095 TGACATCGTCCGTTGAGATTGCTAAGGAGTTGGGTACCTATGAGACCTACGAAGGCTCAC 6154
Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690
|| | ||| |||| || | || | ||| | ||| || || || | | || |||
Sbjct 6155 CTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTTACACCTACCGACCTTTGGG 6214
Query 364691 ACTGGGATACGCT--ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTC 364743
||||||||| ||| | | |||| | || | || ||| |||||| | |||
Sbjct 6215 ACTGGGATA-GCTTGAAGAAATCCA---TCAAACAACACGGTGTCCGCAACAGTTTGCTC 6270
Query 364744 GTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTC 364803
||| || || ||||| || || || | || || ||||| ||||||||||||
Sbjct 6271 GTT---GCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTT 6327
Query 364804 GAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTT 364863
||||| | || || | || || || || || | | |||||||| | || |||
Sbjct 6328 GAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTT 6387
Query 364864 AATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923
|| | || ||||||||||| |||| || | ||| |||| ||||||||||
Sbjct 6388 AACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAAC 6447
Query 364924 TATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAG 364983
||||||||| | | ||||||| | || |||||||| |||||| || | |||
Sbjct 6448 CGTATCATCGCTGATGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAG 6507
Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGAT 365043
| ||||||| ||||| ||||| ||||| ||||| | || | ||||| || |||
Sbjct 6508 GCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAATTGTTCAAATGGCCGCTGAT 6567
Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103
|| ||||| ||| | ||| || || | ||| | ||||| | || ||
Sbjct 6568 CGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 6627
Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| |||| |||| |||||||||||| ||| ||||||| ||||| ||||| ||
Sbjct 6628 GGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 6680
>seq3069
Length=19972
Score = 98.7 bits (108), Expect = 3e-15
Identities = 102/129 (79%), Gaps = 6/129 (5%)
Strand=Plus/Minus
Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGA 111478
|||||||| |||||||| |||||||| || || ||||||||| ||| | |||| | |
Sbjct 15174 GTAAAAATCTGGGATGGCAATGGATCGCGCGAATTTCTAGATAGCAGAGG--CTTGAC-A 15118
Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536
|| || ||| |||||||| || ||||| || || ||||||||||| |||||||| ||
Sbjct 15117 CACCGTGAAGTTGGTGATCTTGGGCCAGTCTATGGCTTTCAATGGCGACACTTTGGGGCC 15058
Query 111537 GACTACAAA 111545
|| ||||||
Sbjct 15057 GAATACAAA 15049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303293382619892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |