Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 273 3e-68
seq3071 113 6e-20
>seq1816
Length=7458
Score = 273 bits (302), Expect = 3e-68
Identities = 1142/1775 (64%), Gaps = 33/1775 (2%)
Strand=Plus/Minus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || ||||| ||||| || || | ||||| || | || || ||||||| | |
Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489
Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309
Query 62267 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250
Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 6249 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191
Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444
||| || || || | | || ||| | || || || || |
Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131
Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62502
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 6130 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073
Query 62503 GAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 62560
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 6016
Query 62561 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 6015 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 5957
Query 62620 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62678
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 5956 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 5897
Query 62679 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACA 62734
||| |||| || || | || || | ||||| | || | ||| || | ||
Sbjct 5896 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 5837
Query 62735 AACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792
| ||||| | |||| || |||| ||||| || || |||| | | | |
Sbjct 5836 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 5777
Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852
||| | || || ||||| | ||| | ||||| || | || | ||| || |
Sbjct 5776 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 5717
Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912
|||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| |
Sbjct 5716 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 5657
Query 62913 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTT 62972
| | ||| | | ||| | | | || || || | || | |||| || ||
Sbjct 5656 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCTT 5599
Query 62973 CGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACA 63030
| ||| | | ||| | ||| |||||||| || | |||| ||| ||||||||
Sbjct 5598 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 5539
Query 63031 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63090
||||| || ||||| | | ||| || ||| | | || || ||||| ||||||||
Sbjct 5538 TTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATC 5479
Query 63091 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149
|||||||| | || ||| || ||||| | || | ||| || || || ||||
Sbjct 5478 CGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCT 5420
Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209
|| || || |||||| | | || ||| | ||||| || || | || | || |
Sbjct 5419 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 5360
Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269
| ||||| || |||||||| || || || | ||||||||| |||||||| |||||| |
Sbjct 5359 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 5300
Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329
||| || | || || ||||| |||| ||||| || | ||| || ||| ||||||
Sbjct 5299 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 5240
Query 63330 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63389
| || | ||| ||||| || || || || |||||||||| | || ||| |
Sbjct 5239 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 5180
Query 63390 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 63449
| | |||||||| || || || |||||||| ||| |||| | || || || || |
Sbjct 5179 TGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATG 5120
Query 63450 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATT 63509
| | || | || || || || | ||||| || ||||| || || |||
Sbjct 5119 AAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATT 5060
Query 63510 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCT 63568
| | || | || ||||| |||||||| || || ||||| || | ||||| ||
Sbjct 5059 TGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACCA 5001
Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603
|| || |||||||| | ||| ||||| || | |||
Sbjct 5000 ACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4966
>seq3071
Length=13184
Score = 113 bits (124), Expect = 6e-20
Identities = 229/336 (68%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 32881 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 32939
||||||| || ||||| |||||||| ||| || | | || |||| ||||||||
Sbjct 5953 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 6011
Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
|| | ||| || |||| || || ||||| || || ||||| || |||||||||
Sbjct 6012 ATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAG 6071
Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 6072 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 6131
Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 33115
|||||||| ||||| || || || | || || || ||||| || ||
Sbjct 6132 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 6191
Query 33116 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175
| | ||| | ||||||||||| | | || || || | || | ||||| |||||||
Sbjct 6192 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 6250
Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|| |||||||| |||||||| ||||| | ||||||
Sbjct 6251 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633603439037600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |