Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3071 147 2e-30 >seq3071 Length=13184 Score = 147 bits (162), Expect = 2e-30 Identities = 205/287 (71%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||||||||| | ||||| || |||| || |||| |||||||| ||||||| Sbjct 6000 ATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGG 6059 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| || | ||| || | ||| || ||||| | || | ||| || || Sbjct 6060 AAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGG 6119 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || |||||||| || ||||||||||| || || || | | || || |||| Sbjct 6120 TTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAG 6179 Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||||||| || || |||| ||||||| || || ||||| | |||| ||| Sbjct 6180 CGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCT 6239 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || | ||||| || ||||| || || ||||||||||| | ||| || Sbjct 6240 TCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6286 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 |||||| ||||||||||| | |||||| || || || || | ||||||| ||| || | Sbjct 5678 GCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAG 5737 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| | | || || || ||||||||||| || || ||||| || ||| || || Sbjct 5738 ACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAA 5797 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || || || || || ||||| || || | ||| | ||||| | | | || | | Sbjct 5798 GATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAG-AGTTTTTGTCTT 5856 Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 | |||||| | | |||||| |||||||| |||||||| ||||| | ||| Sbjct 5857 GAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 5905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556835699499440