Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq3071 185 2e-41
>seq3071
Length=13184
Score = 185 bits (204), Expect = 2e-41
Identities = 358/517 (69%), Gaps = 11/517 (2%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691
|| ||||| |||||||| || |||||||| ||| ||||| | || | | | | ||
Sbjct 5899 CCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 5841
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | || | ||||| || ||| | || || ||||||||||||||| || | ||
Sbjct 5840 CTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 5781
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
||| || ||||||||||||||| || | | |||| | || ||||| ||||| || ||
Sbjct 5780 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 5721
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
|||||| | | || || || || |||| ||||| || |||||||| ||||| |||
Sbjct 5720 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCA 5664
Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| | | |||| || ||| || |||| | ||||||| ||||| || |||||
Sbjct 5663 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGAT 5604
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACC 42990
||| | || ||| | || || | || || ||| | || | ||||||||| ||
Sbjct 5603 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CACTTCTTGGCATGAACGCGAACT 5545
Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG 43048
| ||| |||| |||||| ||| ||||||||| | |||||| || | ||| ||
Sbjct 5544 TGATGAAGCAA-TACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAG 5486
Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108
| | ||||| | | ||| |||||||| |||||||||||||| | | |||||
Sbjct 5485 AAG-GTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAA 5427
Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||| ||||| ||||||||| | || | |||||||||
Sbjct 5426 GACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAG 5390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944296633910560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |