Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3109 149 1e-30 seq779 125 2e-23 seq3494 104 6e-17 seq3071 89.7 1e-12 >seq3109 Length=11437 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| ||| ||| |||||||| || ||||||| Sbjct 9441 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 9382 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | ||| || || |||||||||||||| || ||| | |||| Sbjct 9381 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 9322 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || | || || || || || | ||| ||||| || Sbjct 9321 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 9262 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || || |||||||| |||||||| Sbjct 9261 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9215 >seq779 Length=13020 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | ||| ||||| ||||| || ||||| | Sbjct 2949 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 2890 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || || ||||| ||||| || || |||| Sbjct 2889 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 2830 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || | ||||||||| || || | ||| ||| || || Sbjct 2829 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 2770 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 2769 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 2723 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| |||||||||||| || |||||| Sbjct 2721 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 2662 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | |||||| || |||||||||| ||| |||||| || Sbjct 2661 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 2602 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | ||| ||| || || Sbjct 2601 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 2542 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || || ||||| ||||| || || ||||||||||||| Sbjct 2541 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 2505 Score = 105 bits (116), Expect = 2e-17 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || ||||| || || |||||| | || || || ||| Sbjct 2426 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 2367 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||| ||||||||||||| |||||||| || ||| ||||| || ||| Sbjct 2366 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTG---GTCCGGGGGAATTCCCTCCTTA 2310 Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| || || ||| || ||||| || || | |||||| || || || ||||| ||||| Sbjct 2309 TCCTGAATCTT-GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGAT 2251 Query 288438 CGTCTTCCCGGT 288449 ||||| ||||| Sbjct 2250 GGTCTTGCCGGT 2239 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | ||| || | || | ||||| || || || || || || || Sbjct 3180 TGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCA 3121 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | || || || || || ||||| || ||||||| |||||||| | Sbjct 3120 GAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGT 3061 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || || || || || | || || || || || | ||| |||||| Sbjct 3060 GGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCC 3001 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || |||| |||||||||||| |||||||| Sbjct 3000 ACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 2951 >seq3494 Length=35672 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| || || ||||| | || || |||||||| || | ||| ||||| ||||||||| Sbjct 17864 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17923 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | ||| ||||| || ||| ||||| || || |||||||| || | || || || Sbjct 17924 AAACGTTGTTGG---TCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 17980 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || || || || || ||||| ||||| || || || ||||||||| Sbjct 17981 TCAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACG 18040 Query 288463 AA 288464 || Sbjct 18041 AA 18042 >seq3071 Length=13184 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCT 269171 |||| |||| ||| | || ||| | || ||| | | | || ||||| || | | Sbjct 5603 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTT 5544 Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAA 269231 ||||| ||||| ||||| ||||| || |||||| || | || || ||| | ||||| Sbjct 5543 GATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAGAA 5484 Query 269232 AGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGAC 269291 |||||||| || || || |||| ||| ||||| || || || | ||| ||||| Sbjct 5483 GGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGAC 5424 Query 269292 GAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 ||||||||||| ||| | || | ||||| || ||||||| ||| Sbjct 5423 AAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAGGCTGGTGTTATG 5375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179599897754868