Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3071 127 5e-24 >seq3071 Length=13184 Score = 127 bits (140), Expect = 5e-24 Identities = 181/252 (72%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 |||||||||| || ||||| | |||| | |||||| | ||| ||| |||| || | Sbjct 5625 TCATCACAGAGGCTGTTGAGATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCAC 5566 Query 243563 TTATTGGCATGAACTCTGAACTC-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||| | ||||| ||| || |||||||| ||||| ||||| || | Sbjct 5565 TTCTTGGCATGAACGC-GAACTTGATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTC 5507 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| |||||| | ||||| |||||||| || ||||| || | ||| |||||| Sbjct 5506 CTAGTCGCTCTTGGTAACGAGAAGGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAG 5447 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| || || ||| || || ||||||||||| ||| | || |||| || || Sbjct 5446 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAG 5387 Query 243742 CCTGGTGTGATG 243753 ||||||| ||| Sbjct 5386 GCTGGTGTTATG 5375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102829044876100