Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq779 120 3e-22 seq3109 86.0 7e-12 >seq779 Length=13020 Score = 120 bits (132), Expect = 3e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 ||| ||| |||| || | | ||| | |||||| ||||| ||||||||||| ||||| || Sbjct 3187 AATCTATTGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTT 3128 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 |||||||| ||||| | | || || | |||||| ||||| || || | |||||| || Sbjct 3127 GTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTG 3068 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGC 42150 ||| | ||| | | |||||||| | ||| | |||| |||| | | | || || Sbjct 3067 GTCCGGTGGGATACCCTCCTTGT-CTTGAATCTTTGACTTGACATTGTCAATGGTATCTG 3009 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || | || ||||| || || || | ||||| || ||||| ||||| Sbjct 3008 ACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 2951 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| |||| ||| || || || ||||| || | ||||| || | || || Sbjct 2931 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 2872 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||||||||| || || || || |||||||| | ||| | | |||||| || | Sbjct 2871 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 2812 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||| ||| | ||| | | | || || ||| || || || | ||||| || || Sbjct 2811 ATCTTTGATTTCA-CGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 2753 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||||||||| Sbjct 2752 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 2723 >seq3109 Length=11437 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | ||||| || | ||| |||||||| || ||||| || | Sbjct 9441 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 9382 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || ||||| || ||||| || || || ||||| || | ||| Sbjct 9381 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 9322 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||||| ||| || |||| | | | || || ||||| || Sbjct 9321 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 9262 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||||||||| ||||| || || || || ||||| ||||| Sbjct 9261 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543188314683040