Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 165 8e-36
>seq1816
Length=7458
Score = 165 bits (182), Expect = 8e-36
Identities = 279/404 (69%), Gaps = 0/404 (0%)
Strand=Plus/Plus
Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038
|| |||| || | ||||||| ||||| | ||||| ||| | || || || || ||
Sbjct 5161 GGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGT 5220
Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098
||| | ||| | ||||||| ||| | |||||| ||||||||| || | ||||
Sbjct 5221 CTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCC 5280
Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158
|||||| |||| || ||||| || || ||||| ||| | || | ||||| ||||| |||
Sbjct 5281 AACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGT 5340
Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218
|| | | | ||| | || || |||||||| ||||| |||||||| || ||
Sbjct 5341 GGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTC 5400
Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278
| ||| | ||||| ||||||||||||||||| || | | ||| | || || |||
Sbjct 5401 GAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTC 5460
Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338
|| || | ||| | || || || || ||||| || || || || ||| | | ||||
Sbjct 5461 TATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACA 5520
Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGG 94382
|| | || |||||||||||||| || || | || || | |||
Sbjct 5521 CTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGG 5564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494700900351760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |