Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq779 122 8e-23 seq3109 102 8e-17 >seq779 Length=13020 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || || |||||||| || ||||| |||| | Sbjct 2721 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 2662 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || ||||| |||||| ||||||| || || ||||| ||||| Sbjct 2661 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 2602 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | |||||| Sbjct 2601 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 2542 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | || | || ||||| || ||||| || || Sbjct 2541 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 2507 >seq3109 Length=11437 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | ||||| || | || || || ||||| || ||||| ||| Sbjct 9441 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 9382 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || || ||| |||||| || |||||||| || || Sbjct 9381 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 9322 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||| || | || || Sbjct 9321 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 9262 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| ||| | ||||| || || || ||||| || || ||||||||| || Sbjct 9261 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATGACT 9211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479366801440