Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq3071 96.9 6e-15
seq1816 89.7 8e-13
>seq3071
Length=13184
Score = 96.9 bits (106), Expect = 6e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| ||||||||||| |||||| || || || || || || ||||||| ||| |||||
Sbjct 5670 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 5729
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| |||| || | ||| | |||||| |||||||| || || | || || | ||
Sbjct 5730 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 5789
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| || ||||| ||||| || || ||||| || || || | || | |||| | | |||
Sbjct 5790 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 5849
Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131
|||| || |||| || ||||| || || |||||
Sbjct 5850 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTT 5887
>seq1816
Length=7458
Score = 89.7 bits (98), Expect = 8e-13
Identities = 160/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Minus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCC-TGCTTCTCAGATAGTACAT 203895
||||| || || ||||||||||| | || | |||| || | | || ||||||||
Sbjct 6740 TCTTGATCGACGGTGAACTGAATAG-GTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 6682
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955
|||||||| || ||| | ||| ||| | |||||||||| | |||| || |
Sbjct 6681 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 6622
Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014
|||||| |||||||||||||| || || ||||| | |||||| || ||||| |
Sbjct 6621 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAAC-AAAGGCACCACGATCAG 6563
Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061
||||||| | | ||| || || ||||||||||| || ||||||
Sbjct 6562 CGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 6516
Score = 87.8 bits (96), Expect = 3e-12
Identities = 195/288 (68%), Gaps = 6/288 (2%)
Strand=Plus/Minus
Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTC--TTTCACC-CT 205164
|| ||| ||||||| ||||| ||||| || | ||| ||| | ||| ||||| | |
Sbjct 5550 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCA-ATCCG--CGTTCTTTTCAACACG 5494
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| ||| || || || ||||||| | | || || ||||||||||| | | | | ||
Sbjct 5493 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 5434
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284
| || |||||||| | |||||| | | || || |||||||| ||||| |
Sbjct 5433 CTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 5374
Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344
| || || | ||| || || | |||||| ||||| ||||| || | || |
Sbjct 5373 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 5314
Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
||||||||||| |||||||| || | ||||||| | | ||||| ||
Sbjct 5313 ATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGT 5266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795119358379360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |