Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3071 96.9 6e-15 seq1816 89.7 8e-13 >seq3071 Length=13184 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || ||||||||||| |||||| || || || || || || ||||||| ||| ||||| Sbjct 5670 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 5729 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || | ||| | |||||| |||||||| || || | || || | || Sbjct 5730 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 5789 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| ||||| || || ||||| || || || | || | |||| | | ||| Sbjct 5790 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 5849 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131 |||| || |||| || ||||| || || ||||| Sbjct 5850 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTT 5887 >seq1816 Length=7458 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCC-TGCTTCTCAGATAGTACAT 203895 ||||| || || ||||||||||| | || | |||| || | | || |||||||| Sbjct 6740 TCTTGATCGACGGTGAACTGAATAG-GTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 6682 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 |||||||| || ||| | ||| ||| | |||||||||| | |||| || | Sbjct 6681 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 6622 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||| |||||||||||||| || || ||||| | |||||| || ||||| | Sbjct 6621 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAAC-AAAGGCACCACGATCAG 6563 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 ||||||| | | ||| || || ||||||||||| || |||||| Sbjct 6562 CGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 6516 Score = 87.8 bits (96), Expect = 3e-12 Identities = 195/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTC--TTTCACC-CT 205164 || ||| ||||||| ||||| ||||| || | ||| ||| | ||| ||||| | | Sbjct 5550 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCA-ATCCG--CGTTCTTTTCAACACG 5494 Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || || || ||||||| | | || || ||||||||||| | | | | || Sbjct 5493 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 5434 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284 | || |||||||| | |||||| | | || || |||||||| ||||| | Sbjct 5433 CTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 5374 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | || || | ||| || || | |||||| ||||| ||||| || | || | Sbjct 5373 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 5314 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 ||||||||||| |||||||| || | ||||||| | | ||||| || Sbjct 5313 ATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGT 5266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795119358379360