Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq493 134 5e-26
seq779 98.7 4e-15
seq3494 89.7 2e-12
>seq493
Length=14312
Score = 134 bits (148), Expect = 5e-26
Identities = 201/286 (70%), Gaps = 11/286 (4%)
Strand=Plus/Plus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || ||||||||||||| || ||||| || ||||||| || ||||| ||||| |
Sbjct 7428 ATGCTGTTGTTACTGTTCCCGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 7487
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
|||| || || || ||||| || ||||| || | |||| |||||||| || || || |
Sbjct 7488 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 7547
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498
| || || || || | ||||| | || || ||| |||| || | |||
Sbjct 7548 TTGCCTACGGTCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 7597
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558
|| ||||||||||| |||| ||||| || ||| || | || || || |||||
Sbjct 7598 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 7657
Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
||| | || |||||||| ||||| | || |||||||| | ||||
Sbjct 7658 AAGTCTACAAATGGTGACACTCACTTGGGTGGTGAAGACTTCGATA 7703
>seq779
Length=13020
Score = 98.7 bits (108), Expect = 4e-15
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
|||| || || || ||||| || || || |||||||| || || || || || | ||| |
Sbjct 2505 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 2564
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| | | || || || || || ||||| || |||||||| |||||||||||||| |
Sbjct 2565 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 2624
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239
| ||| | || |||||||| |||||||| | || || || || || || | || |
Sbjct 2625 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2684
Query 391240 ATGCAACACTTCACTTAGT 391258
| | || |||||||| ||
Sbjct 2685 AATCCACCCTTCACTTGGT 2703
Score = 86.0 bits (94), Expect = 2e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193
|| ||||| |||||||| |||||||| || || ||||| || || || ||| |||| |||
Sbjct 2299 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 2358
Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240
|||||||||||||| | || ||| || || || ||| | |||||
Sbjct 2359 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGA 2405
>seq3494
Length=35672
Score = 89.7 bits (98), Expect = 2e-12
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112
|||| ||||| || || || || || || || || || ||||| || || || ||||||
Sbjct 18048 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGAT 17989
Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172
| ||||| | | || || || || || ||||| |||||||| || || ||||||
Sbjct 17988 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 17929
Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232
||||| || ||| | || || ||||| || || ||| |||| | | || || || |||
Sbjct 17928 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATT 17869
Query 391233 GATAAGG 391239
| ||||
Sbjct 17868 CAAAAGG 17862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975627118105448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |