Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1816 190 3e-43 seq3071 129 7e-25 >seq1816 Length=7458 Score = 190 bits (210), Expect = 3e-43 Identities = 1148/1808 (63%), Gaps = 59/1808 (3%) Strand=Plus/Plus Query 111556 TCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCAC 111615 |||||||||||||| | ||||| | |||| ||||| | ||| |||| Sbjct 4916 TCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAACGTCCAC 4975 Query 111616 AGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGG 111675 || | ||| ||||||| || || | ||||| || || || ||||| || | | | Sbjct 4976 AGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTG 5035 Query 111676 AGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735 |||| ||| || |||||| |||| ||||| | || || || ||| || Sbjct 5036 AGACCTACAACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCG 5095 Query 111736 CTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAA 111795 ||||||||||| | | || | || || ||||| |||| | ||||||||| | Sbjct 5096 CTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTA 5155 Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855 | |||| ||||| | || |||| |||||| ||||| || ||||| |||| Sbjct 5156 TTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTA 5215 Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAAATGGT 111914 | || | |||| || || | |||| | || | || ||||| || ||| Sbjct 5216 TTGGTCTCAACATTCACAGAATCCGTGCCA-CTGGTGCATACATCGCCGGTACCAACGGT 5274 Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974 | || | || || | || ||||| || || || || ||| || | || || || Sbjct 5275 AACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGAC 5334 Query 111975 CAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| ||| ||||| | || | ||||||||||||||||| |||||||| Sbjct 5335 CAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCACGCA 5391 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| | | |||||||| || | || ||||| || | || || | || ||| Sbjct 5392 GATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGT 5451 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 ||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| | Sbjct 5452 GATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCG 5511 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCCGGTCTCTCCGATGCCGTGGGTGAG 112205 ||||| | || | || || ||| | | || || | | |||| || || Sbjct 5512 GATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGGCGAC 5568 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263 ||||||||||| ||||| | || ||| | ||| || | | | | || ||| | Sbjct 5569 GAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACCATCA 5626 Query 112264 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 ||| | | ||| | | |||||| || ||||||| ||||| || | |||| | Sbjct 5627 AAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCATTCA 5686 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 |||||||||| || || || ||| | ||||| || |||||||| | || || | Sbjct 5687 TGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATTCGCA 5746 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 | ||||| | || |||||||| | |||| | | | |||||| ||| |||| Sbjct 5747 GCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGCTGTA 5806 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGATTAT 112502 || | || || || |||||||| | | |||||| | || | | || | |||| Sbjct 5807 ACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGATTTC 5865 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 |||| || ||||| ||||| || || | |||| | |||| | ||||| | Sbjct 5866 CAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGACATC 5925 Query 112563 AATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621 || | |||||||| ||| || | || ||| | | || || || || | | | Sbjct 5926 AACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCATCGACCTATCGCTGT 5984 Query 112622 CGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 112681 |||||| |||||||| || |||| || | | ||| ||||||| || || Sbjct 5985 CGGTGTTCAAGGTCTTGCCGATGCTTTTTTGGCTCTTCGATTACCATTTGAATCACCTGA 6044 Query 112682 AGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741 ||| ||| | |||| | || || || || || || ||||| ||| |||| | Sbjct 6045 AGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGA-CATCG 6102 Query 112742 TTCG--GAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | || ||| | || || |||| ||| | ||||| |||| || || || || | | Sbjct 6103 TCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACCTACGAAGGCTCACCTGTCT 6160 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGG 112856 | | || | ||||||| |||||||||| | || | ||| | | | | |||||| Sbjct 6161 CGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACCGACCTTTGGGACTGG 6219 Query 112857 GA-CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 || ||| | ||| || |||||| | | ||| | || |||||| | | | || || Sbjct 6220 GATAGCT-TGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGCTCC 6278 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 |||||||||||| |||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 6279 TATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATACAC 6338 Query 112976 GACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 113033 | |||||||| ||| | | | | || ||||| || |||| ||| ||| Sbjct 6339 TTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CCATG 6395 Query 113034 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCAT 113089 || | | || || || || || | ||||| | | |||||| | | |||| Sbjct 6396 GCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTATCAT 6455 Query 113090 -GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | ||| |||||||| |||||||| ||| | ||||||| ||| || ||| Sbjct 6456 CGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGGCAC 6511 Query 113149 TGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 | ||| || || ||||| | || | ||| | | || | |||||||| ||||| Sbjct 6512 TTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGATCG 6569 Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 113264 |||| ||| |||| | ||||| | | ||||| | |||| || || || ||| Sbjct 6570 TGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 6627 Query 113265 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 113324 |||| | |||| ||||| | | ||||||| ||||||||| || || ||||| Sbjct 6628 GGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGGAATGTAC 6687 Query 113325 TACCTCCG 113332 |||||||| Sbjct 6688 TACCTCCG 6695 >seq3071 Length=13184 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166 |||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| | Sbjct 5905 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 5846 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | |||||||| |||| || | || ||||| ||||||||| ||||||||| ||| Sbjct 5845 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 5787 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || ||| |||| | |||||||||||||| || | ||| | |||||| ||||| Sbjct 5786 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 5727 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||| ||||| ||||| ||||| || || ||||| Sbjct 5726 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 5694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620714420036320