Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1816 174 2e-38 seq3071 114 2e-20 >seq1816 Length=7458 Score = 174 bits (192), Expect = 2e-38 Identities = 1149/1822 (63%), Gaps = 59/1822 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || |||||||| ||||| || | |||||| |||| Sbjct 6695 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 6636 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| || | ||| | |||||| || || ||||| || | || Sbjct 6635 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 6576 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||||||||| ||||| | | || ||| ||| |||||||| |||||| Sbjct 6575 GCACCACGATCAGCGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 6516 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | |||||| ||| | ||||||| |||||||||||||| |||||| || Sbjct 6515 TAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCA----TC 6460 Query 109648 ACC-ATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703 | | |||| | | |||||| | | ||||| | || | | ||||| | | Sbjct 6459 AGCGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAG 6400 Query 109704 AAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 || ||| ||| || || ||||| ||||| | || || |||||||||| Sbjct 6399 CAGCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTA 6342 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | ||||| ||||| || ||||| ||| || || ||||| | ||| ||||| ||| Sbjct 6341 GAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGC 6282 Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881 || ||||| | ||| | |||||| |||| ||| | | ||| | | | || Sbjct 6281 ATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGT-TGTTTGATGGATTTCTTCAAGCT 6223 Query 109882 -TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 ||||| || || | | || | || ||| |||||||||| ||||||| | Sbjct 6222 ATCCCAGTCCCAAAGGTCGGTAGGTGTAA-CTC-----CCCACATATCGTATTGAAGTTC 6169 Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| | |||| || || | | | |||| || | ||| ||| || | ||| Sbjct 6168 GCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTC 6109 Query 110001 ---GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG 110057 ||| || | | | || || || || ||||| || || || ||| || ||| Sbjct 6108 AACGGACGATGTC---AAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTT---GAG 6055 Query 110058 GCGAGACTCTTCAC---AGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACC 110114 | | ||||| | || || || | | | | | ||| |||| || ||||| Sbjct 6054 GTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAGCATCGGCAAGACC 5995 Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174 |||||||||| | | || || ||||| | || || || | ||||| Sbjct 5994 TTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGG 5935 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGA-GATTCTTCGTCACAGTCTTC-GTGATTTCA 110232 ||| ||||| ||| |||| | || | | |||| | || | ||| || | || Sbjct 5934 GTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT--GACAACGACTTGAGTAACCTCG 5877 Query 110233 TGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATA 110292 || || || | | ||||| | ||| | | | | | ||| || | ||||||||||| Sbjct 5876 TGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGGAGAGCAATG 5817 Query 110293 GACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACAC 110352 || || | || || || || ||| | | | |||||| | |||||| || ||| Sbjct 5816 GAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCAC 5757 Query 110353 AAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCC 110412 || ||||| || |||| || | |||||| || || || ||||||||||||| Sbjct 5756 AAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCC 5697 Query 110413 TTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACA 110472 || || |||||| |||| | || || || || || | || |||||||| | ||| | Sbjct 5696 TTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGC 5637 Query 110473 TCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGT 110530 | ||| || || |||| | | |||||||| ||| || | || | Sbjct 5636 TTTTGGGCTTTGATGGTCTTGCG--ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAG 5579 Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGG 110589 | ||||| || | || || ||||||| | |||| | || | ||| || | || Sbjct 5578 CTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGACATTCATTGGGGCACATTAGT 5520 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 | ||||| | || ||||| | ||||||||| || || |||||||||| || || Sbjct 5519 GTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAG 5460 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 ||||| |||||| || | ||||| | || ||||| || || |||| || || Sbjct 5459 AAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCG 5400 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGAC----- 110764 | | ||| | |||||| || || |||||||| || | | || | |||| Sbjct 5399 AAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACC---AGGACGCTTGTTT 5343 Query 110765 CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 || ||| ||| || || | || ||| |||||| || | ||||| || | || || Sbjct 5342 CCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCG 5283 Query 110824 TCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| | ||| || ||||| || | || || | ||||||| || ||| || | Sbjct 5282 TTGGAGTTACCGTTGGTACCGGCGATGTATGCACC-AGTGGCACGGATTCTGTGAATGTT 5224 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAA 110941 | ||||||||| || || ||| || ||||| ||| |||| ||| |||||| Sbjct 5223 GAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT-TGAGGGTATCATAAA 5165 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 |||||||||| ||| |||| | |||| || ||||| || || | ||| | | | Sbjct 5164 TACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTG 5105 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTT 111059 | || || || ||| |||||||| | || || |||| | ||| |||||| Sbjct 5104 GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA--GTATTTGTTGGACATAAG 5047 Query 111060 GTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCAT 111119 |||||| || || | ||| | ||| | |||||||||||||| |||||| ||||| Sbjct 5046 GTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCAT 4987 Query 111120 GAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTC 111179 || ||| | || || ||| | |||||||| | || ||||||| ||| Sbjct 4986 GATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATCGCTC 4927 Query 111180 TAGGGTCTTGAGACCAAAGTAT 111201 |||||||||| || |||||| Sbjct 4926 GAGGGTCTTGAATCCGAAGTAT 4905 >seq3071 Length=13184 Score = 114 bits (126), Expect = 2e-20 Identities = 349/522 (67%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || ||||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 5394 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 5453 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || || || | | | | ||| ||||| || ||||| Sbjct 5454 AAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT-ACCAAGAGCGACTAGGAGACG 5512 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||||| ||| ||||||| |||| |||| | || ||||| || | || ||| Sbjct 5513 ATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 5572 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCT-CGATCTCCACAGCTTCTTTCACGA-----T 119440 || ||||| ||| | ||| ||||| | ||||||| ||||| ||| | | || | Sbjct 5573 AGGAAGAGCCTCGGTCAAGAA-TTCTTGTTCGATCTCAACAGCCTCTGTGATGACATCTT 5631 Query 119441 GGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCA 119498 ||| | | || || | || ||| | ||| ||| | || | | | ||| | Sbjct 5632 GGACAGCCTGCTTGCT-TGGACGGT--GCTTC--AAGTGGGAGAAGAGGAGGC-ACG-CG 5684 Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558 || || ||| || |||||||| || |||||||||||||| ||| || |||| | Sbjct 5685 AAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCC 5744 Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618 || | || | ||||| ||||| ||||| | | || |||| |||||||||||| Sbjct 5745 ATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCC 5804 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCA 119674 || ||| || ||||| | ||||||| ||| |||||| ||| ||||| ||| ||| Sbjct 5805 TCAACAGCAGCAAAAGCAACCAGACGCTGAGC-AAAGGTAGAGTTTTTGTCTTGAATCCA 5863 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 ||| |||||||| ||| || || ||||| || || || Sbjct 5864 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 5905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588949451906800