Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1816 244 1e-59 >seq1816 Length=7458 Score = 244 bits (270), Expect = 1e-59 Identities = 1161/1818 (64%), Gaps = 59/1818 (3%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| ||||||||||| || |||||| || | |||||| |||| Sbjct 6695 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 6636 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || || || |||| || ||||| ||| |||||||| ||| Sbjct 6635 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 6576 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 |||||| | || ||||| | || | | ||| | || | ||||| || || Sbjct 6575 GCACCACGATCAGCGGCCATTTGAACAA--TTGTTCGTTGAGAAATCTCCCAGACGGTCT 6518 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| || |||||| ||| |||| || | | || |||||||| ||||| || | Sbjct 6517 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAG 6458 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 || || | | |||||| | | ||||| | || || | ||||| |||| | Sbjct 6457 CGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCA 6398 Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944 | ||| ||| |||| || ||||| || | | | | ||| |||||||| | Sbjct 6397 GCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACG-AGAGTAGATGTTAG 6341 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004 ||||| ||||||||||| || || ||| | ||||| | |||| ||||||||||| Sbjct 6340 AAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCA 6281 Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 | || || | | | |||||| || | ||| | || |||||| || ||| | || Sbjct 6280 TAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTAT 6221 Query 106065 CCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTG 106122 ||||||| | | | | ||| | || | |||||||||| ||||||| | ||||| Sbjct 6220 CCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAAGTTCGCCCTTC 6162 Query 106123 G-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 | ||| | ||| || || | |||||||||| ||| | | ||| | ||| | Sbjct 6161 GAGACAGGTGAG--CCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGG 6104 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 || || | ||||| || || ||||| ||||| || || | | |||||||| Sbjct 6103 ACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTT 6044 Query 106242 CATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAAC 106296 || ||| ||||||| || || | || |||| |||| || ||||||||||| Sbjct 6043 CAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAGACCTTGAAC 5989 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAA 106355 ||| | | | ||||||| || || | ||| ||||| || ||| ||||| || Sbjct 5988 ACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGGGGTAGT 5930 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 106415 | || ||||||||| ||| | ||| || ||| | | || | || ||||| | Sbjct 5929 AGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCT 5870 Query 106416 TTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGATTGATG 106472 ||| |||| |||| | ||| ||||| ||| | |||| || || || || | Sbjct 5869 TTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAG 5813 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 |||| || || ||| ||||| | | ||| || | ||||||||| ||||| | Sbjct 5812 CCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAAT 5753 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 |||| || ||| || || | ||||||||||| ||||| |||||||| |||||||||| Sbjct 5752 TGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGT 5693 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGG 106652 | |||||| | || | || ||||| || || | || |||||| | | ||| | | Sbjct 5692 AAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTT 5633 Query 106653 CGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 ||| | |||| ||| | | || ||| ||| || | ||||| |||| Sbjct 5632 GGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTT 5576 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAG 106766 ||||||| || || | || | | || || | | ||| || || | || | Sbjct 5575 CAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACATTAGTG 5519 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 ||| | | || ||||| ||||||||||| || || |||||||||| || | | Sbjct 5518 TCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGA 5459 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886 | ||||| | || | ||||| | || ||||| ||| | || |||||||| | Sbjct 5458 AAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGA 5399 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 106940 | ||| |||||||| ||||||||||||||||| | || | ||||| | Sbjct 5398 AAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACGCTTGTTTC 5342 Query 106941 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 107000 || |||| | || || | || ||| || || || || ||||| || | || || | Sbjct 5341 CACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCGT 5282 Query 107001 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060 || | ||| || || || || | | |||| | | || |||| | Sbjct 5281 TGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGA 5222 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 |||||||| ||||| || ||||| ||||| | | || || |||| |||| Sbjct 5221 GACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATAC 5162 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || |||||||| | | || |||||||| || | ||| | | ||||| Sbjct 5161 CATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGTGCTTGTGGTG 5102 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239 ||||||| ||| || || || | ||||| |||| || | | |||||| || | Sbjct 5101 TACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACATAAGGTTG 5043 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | | || || || || ||||| || || | ||| |||||||| | | Sbjct 5042 TAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATC 4983 Query 107300 ATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAG 107358 || | || || ||| | | |||||||| || |||| || | || ||| || Sbjct 4982 ATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC-GCTCGAG 4924 Query 107359 GGTTTTGAGACCAAAGTA 107376 ||| |||| || ||||| Sbjct 4923 GGTCTTGAATCCGAAGTA 4906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954206615440