Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3543 159 4e-34 >seq3543 Length=23122 Score = 159 bits (176), Expect = 4e-34 Identities = 211/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||||| | || | | ||| | |||||| | || | ||||| |||||||| ||| Sbjct 20796 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 20737 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 ||||| |||||||| | | || ||||| ||| ||||||| || || | | | ||| Sbjct 20736 GCTGCTTTCTTTGCTGCTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 20677 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 ||| || || || |||| || ||||| ||||||||||| ||||| ||| Sbjct 20676 GTGTCGAAGGACAGATTGGGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAACAG 20617 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 ||||||||||| || || || || ||||| |||||||||| |||||| ||||||||||| Sbjct 20616 CATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTAAT 20557 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 158714 ||| | |||||||| | || |||||| | | ||||| | ||||| || Sbjct 20556 ATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 20504 Score = 129 bits (142), Expect = 7e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605 |||||||||||||| ||| |||| |||||||| || || | || | | | | | || Sbjct 19605 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAGCCAGAGATTAAGGCTGCT-TG 19547 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 | | ||||||||| || | || ||||| || || | || ||||| ||| | ||||| || Sbjct 19546 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 19487 Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725 | || | || |||| |||||| ||||| |||||||| ||| | || || Sbjct 19486 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 19427 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 ||||||||||||||||||||| || ||||| || || || || || ||||||||| Sbjct 19426 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 19372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588024693592160