Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3109 122 6e-23 seq779 100 2e-16 seq3494 91.5 1e-13 >seq3109 Length=11437 Score = 122 bits (134), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| || || ||||| ||||| |||||| | ||| |||| || Sbjct 9423 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 9364 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || |||||||| || | || | ||||||||||| Sbjct 9363 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 9304 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| ||| || ||||| |||| ||| ||||| Sbjct 9303 ATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGT 9248 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| |||||||| || || || ||||||||||| Sbjct 9247 TTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9215 >seq779 Length=13020 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||||||||| || || ||||| ||| |||| ||| Sbjct 3159 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 3100 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| ||||| || | ||| || ||||| | || | ||||||||||| | Sbjct 3099 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGA 3040 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | || | || || || | || ||||| ||| Sbjct 3039 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 2980 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| || |||||||||||| Sbjct 2979 CCAGTCAAAGTCTTGACGAAGATCTGCATA 2950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | |||| |||||||| ||||| ||||| || || | || |||| || Sbjct 2931 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 2872 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || || ||||||||||| | || | |||||||| || Sbjct 2871 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 2812 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| ||| |||| |||| | || | |||||| || | || || | Sbjct 2811 ATCTTTGATTTCACGTTGTCGATGGTATC---TGAC--GACTCAACCTCCAATGTGATTG 2757 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || || ||||| || ||||| |||||| Sbjct 2756 TCTTTCCGGTAAGTGTCTTGACGAAGATTTGCATA 2722 >seq3494 Length=35672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || |||||||| ||||| |||||| ||||| | || || || || |||||||| || || Sbjct 17864 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17923 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||||| ||||| | || | ||||||||||| ||||| ||||| | Sbjct 17924 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17983 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | ||| || ||| || || | ||| ||||| |||||||| || ||||| || ||| Sbjct 17984 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAG 18043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324619332961968