Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq3109 122 6e-23
seq779 100 2e-16
seq3494 91.5 1e-13
>seq3109
Length=11437
Score = 122 bits (134), Expect = 6e-23
Identities = 156/213 (73%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| ||| ||| || || ||||| ||||| |||||| | ||| |||| ||
Sbjct 9423 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 9364
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || ||||| || || || |||||||| || | || | |||||||||||
Sbjct 9363 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 9304
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| ||| || ||||| |||| ||| |||||
Sbjct 9303 ATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGT 9248
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| |||||||| || || || |||||||||||
Sbjct 9247 TTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9215
>seq779
Length=13020
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||||||||| || || ||||| ||| |||| |||
Sbjct 3159 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 3100
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| ||||| ||||| || | ||| || ||||| | || | ||||||||||| |
Sbjct 3099 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGA 3040
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||| | || | || | || || || | || ||||| |||
Sbjct 3039 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 2980
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || | |||||| || ||||||||||||
Sbjct 2979 CCAGTCAAAGTCTTGACGAAGATCTGCATA 2950
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/215 (70%), Gaps = 10/215 (5%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | |||| |||||||| ||||| ||||| || || | || |||| ||
Sbjct 2931 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 2872
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || || ||||| || || ||||||||||| | || | |||||||| ||
Sbjct 2871 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 2812
Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947
||||| ||| ||| |||| |||| | || | |||||| || | || || |
Sbjct 2811 ATCTTTGATTTCACGTTGTCGATGGTATC---TGAC--GACTCAACCTCCAATGTGATTG 2757
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| ||||| || || ||||| || ||||| ||||||
Sbjct 2756 TCTTTCCGGTAAGTGTCTTGACGAAGATTTGCATA 2722
>seq3494
Length=35672
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
|| |||||||| ||||| |||||| ||||| | || || || || |||||||| || ||
Sbjct 17864 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17923
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| ||||| ||||| | || | ||||||||||| ||||| ||||| |
Sbjct 17924 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17983
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973
|| | ||| || ||| || || | ||| ||||| |||||||| || ||||| || |||
Sbjct 17984 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAG 18043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324619332961968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |