Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1816 159 4e-34 seq3071 82.4 9e-11 >seq1816 Length=7458 Score = 159 bits (176), Expect = 4e-34 Identities = 301/440 (68%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 ||||| || || ||||| |||| | | ||||||||||||||||| || ||||| | || | Sbjct 5576 TCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTC 5517 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AA 48244 |||||| | | |||| || | |||| || | ||| || ||||| | || ||| || Sbjct 5516 CAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACA-AGGCATAGAA 5458 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | | | | |||||| ||||| ||| || || || || || || | Sbjct 5457 AAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAA 5398 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| || ||||| || || | ||| | ||| | | |||| || || || || || || Sbjct 5397 AACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACC 5338 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||| || | ||||| ||||| || || |||||| || ||| || || || || || || Sbjct 5337 TTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGGTACGATGCCGTTGGA 5278 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 |||| ||||| || | || || ||| | || | || | ||| | ||| Sbjct 5277 GTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACC 5218 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 ||||| || || ||||||| || | |||||| || |||||||||||||| || || Sbjct 5217 AATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCATC 5158 Query 48545 TATACTATCATCTATCATAT 48564 |||||||| || |||||| Sbjct 5157 AATACTATCCTCCTTCATAT 5138 >seq3071 Length=13184 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| || || || | ||||| ||||| || | || || | |||||| |||||||| Sbjct 5721 TCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCG 5780 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 ||||||||| ||||| || || || || || ||||||||||| || | | || | Sbjct 5781 AATGATCCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAG 5840 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 ||| | || | ||||||||| | | ||||| || || ||||| || Sbjct 5841 GTAGAGTTTTTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 5890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083462945840