Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-23 seq3204 98.7 8e-15 seq421 98.7 8e-15 >seq9 Length=25590 Score = 127 bits (140), Expect = 2e-23 Identities = 260/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || || || || | || || ||||| || ||||| | Sbjct 24057 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 24116 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || |||| || | || | ||| | ||||| | || | ||||||||| Sbjct 24117 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 24176 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || || || | | || || || ||||| Sbjct 24177 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 24236 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || ||||| | || ||||| ||| ||| ||| |||||| | Sbjct 24237 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 24296 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || || |||| ||| || || || || | || || | || | | Sbjct 24297 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 24356 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || ||||| || || || |||||||| |||||| Sbjct 24357 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 24416 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || || || ||||||| ||||| Sbjct 24417 AACGGTATCATGAATGTCTCTGCT 24440 Score = 125 bits (138), Expect = 6e-23 Identities = 315/475 (66%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 23046 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 23105 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || ||||| ||||| | |||| | | || ||||| || || Sbjct 23106 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 23165 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || |||||||| ||| | || || | | || || | || || || ||| Sbjct 23166 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 23225 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| | || ||| | | | | | ||||| || ||||||| | | Sbjct 23226 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 23285 Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | | |||| | ||| ||||| |||| ||| |||| || || ||||| || | | Sbjct 23286 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 23343 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | |||| | || || || | | ||| | || | | || || | |||| Sbjct 23344 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 23403 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | |||||||| || | ||||| ||||||||||| || |||||||| || | || || | Sbjct 23404 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 23463 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || |||||||| ||||| ||||| || ||||| || ||||| |||| || || Sbjct 23464 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGG 23518 >seq3204 Length=41478 Score = 98.7 bits (108), Expect = 8e-15 Identities = 257/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || ||||||||||| || | |||||||| |||||| | | || | || ||| Sbjct 4541 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 4485 Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||| ||| | | || || || | ||||| | || | |||||||| | Sbjct 4484 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 4429 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || || ||||||| ||||||| || | ||| ||||| || ||| ||| Sbjct 4428 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 4369 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 ||||||| | || || || | || || ||| | | || |||||| | | Sbjct 4368 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 4309 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||||||| | || || ||||| || || | ||||||| || | || || Sbjct 4308 TGAAGGAGAGCGTGCTTTGACAAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 4249 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 |||||| || || || ||||| || || |||||||||||| | ||||| | || ||||| Sbjct 4248 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 4189 Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||| ||||| || || ||| |||| || Sbjct 4188 TGGAATCTTGAAGGTTACCGCTGGTGACAA 4159 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 ||| ||| || ||||| ||| | ||||||||||| ||| || ||||| |||||| Sbjct 5677 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 5618 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | || || ||||| || | | |||||| || ||||| | Sbjct 5617 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 5558 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 ||||| || |||| ||| || || |||||||| || Sbjct 5557 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 5520 >seq421 Length=29006 Score = 98.7 bits (108), Expect = 8e-15 Identities = 247/373 (66%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||||||||| ||||| |||||||| | || || || | ||||| ||| | Sbjct 571 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 512 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| ||||| | || ||||| ||||| || || | || | | ||| | Sbjct 511 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 452 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073 | |||| ||| || ||| | | | | || || || | || || || | Sbjct 451 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACTTTGGAGCCCGTTGC 393 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||||| | | ||| | || || || |||||||| || |||| || || |||||||| Sbjct 392 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 333 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||||||||| | ||||| || ||| | | || || | ||||| || || || Sbjct 332 TGGATCTACCCGTATTCCCAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 273 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 || | |||| |||| || |||||||||||||| || ||||| || ||||||| | Sbjct 272 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 213 Query 552254 TATTCTTTCTGGA 552266 ||| || || ||| Sbjct 212 TATCCTCTCAGGA 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029105298456940