Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3071 132 9e-26
>seq3071
Length=13184
Score = 132 bits (146), Expect = 9e-26
Identities = 338/512 (66%), Gaps = 11/512 (2%)
Strand=Plus/Minus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872
|||| |||| ||| || ||||| | | ||||| ||| | | | | | |||| |||
Sbjct 5895 GCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTT 5837
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
| |||| ||||| || ||||||||||| ||||||||||| ||||| || || || ||
Sbjct 5836 GCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCT 5777
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991
| ||||||||||||||| || || ||| | || || ||||| ||||| |||||
Sbjct 5776 TCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCT-CACTTTCTCCAATGAGCT 5718
Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051
|||| | | || || |||||||| | || || || ||||| |||| | | ||||||
Sbjct 5717 CATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCACTT 5661
Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110
| ||| || |||| || | ||| | | |||||| ||||||||| |||||||
Sbjct 5660 GAAGCACCGTCC-AAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCG 5602
Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170
| | || || | ||||||||| | | |
Sbjct 5601 AACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGA 5542
Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC 26230
||| |||||||| |||| || ||||| | ||| || | || || || |
Sbjct 5541 TGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAGAAGG 5482
Query 26231 TCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289
| ||| ||| ||| ||||| |||||||| ||||| ||||| || | | ||| |||||
Sbjct 5481 TGTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 5423
Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||||| || ||||| || || ||||| ||
Sbjct 5422 AACTTCTTCGAGAAGAGAGTTGGTGACTACCA 5391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928802932320640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |