Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9 165 5e-35 seq779 105 4e-17 seq3494 93.3 3e-13 >seq9 Length=25590 Score = 165 bits (182), Expect = 5e-35 Identities = 332/488 (68%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || ||||| |||||||| || ||||||| || || | ||| |||| || || Sbjct 23046 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 23105 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || |||| ||| || |||||||| || || | |||| || || ||| || || Sbjct 23106 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 23165 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || |||||||| | |||| |||||||| || | || | |||||| ||||| Sbjct 23166 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 23225 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| || | ||| || || ||| || |||| | Sbjct 23226 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 23285 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || |||| ||||| |||| ||| |||| || || ||||| || | || Sbjct 23286 TTCAAG--GGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 23343 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | || || ||| | || || || | || | | || || | ||| Sbjct 23344 AGATGAGGGAGACTGCTGAGGCC-TACCTCGGTGGAACCGTCAACAACGCTGTCGTCACT 23402 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||||||||| || | || || ||||||||||| || |||||||| || || || Sbjct 23403 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCC 23462 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| |||||| | ||||| || || || || || ||||| || ||||||| ||| | Sbjct 23463 GGTCTCAATGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTTG 23522 Query 474869 GATAAGAA 474876 || ||||| Sbjct 23523 GACAAGAA 23530 Score = 111 bits (122), Expect = 1e-18 Identities = 451/700 (64%), Gaps = 23/700 (3%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||| || |||||||||||||| | || || || || | || || | Sbjct 23751 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCCTCCTCTGCCCAGACATCC 23810 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605 | ||| | || ||||| || || || || || || || |||| || || | ||| Sbjct 23811 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 23869 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 || || || |||| || ||||| || || | | || || || | || || Sbjct 23870 TTTCGAGGAACTTTGCCAAGACCTCTTCCGATCCACCACCAACCCAGTCGACCGTGTCCT 23929 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | || | || | |||||||| |||||| || || || | || || ||||| || Sbjct 23930 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 23989 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780 | || ||| || |||| ||| ||||| || || || ||||| || | Sbjct 23990 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 24044 Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838 || |||| | || |||||||| ||||||||||| || ||||| ||||| || |||| Sbjct 24045 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTA 24102 Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893 | | || ||| | ||| | || ||| || | || | ||| | || || | Sbjct 24103 TCCTCTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 24160 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 ||| | || | ||| | || || | ||| || ||||| || || ||| || | || Sbjct 24161 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 24220 Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 || | || || ||| || || |||| || || || | || ||||| ||| | Sbjct 24221 CACCACCATTCCCACCAAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 24280 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| || ||| |||| || ||||| |||| ||| || || || ||| || || Sbjct 24281 TGTCTTGATTCAAGTCTTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGG 24340 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 || || | || |||||||| |||||||| | || ||||| ||||| || || || Sbjct 24341 AAAGTTCGAACTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCAC 24400 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 || ||||||||||| || ||||| | ||||| ||||| Sbjct 24401 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 24440 >seq779 Length=13020 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | || | || || || || || || ||||||| ||||| Sbjct 3172 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 3113 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||| || | |||||||||||||| || | || ||||| || || || || || Sbjct 3112 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 3053 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||||||| |||||| ||||| ||||| | | | | || ||| Sbjct 3052 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 2993 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | |||||| ||||| || || Sbjct 2992 -TGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 2954 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | ||| ||||| ||||| | || || || | |||||| Sbjct 2944 ACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGT 2885 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||||||||| |||||||| ||||||||||| || || || || || || Sbjct 2884 GCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACC 2825 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| ||||| |||||| ||| || || || ||||| | | | || | ||| Sbjct 2824 CTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAA 2765 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| || ||||| ||||| ||||| Sbjct 2764 -TGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTG 2726 >seq3494 Length=35672 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||| || || || | ||||||||| || || |||||||| |||||| Sbjct 17897 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTG 17956 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| ||||||||||||| | |||||||| || Sbjct 17957 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCAGAGGACTCGACCTCAAGGGTGATG 18016 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763 || || || || || ||||| ||||| Sbjct 18017 GTCTTTCCCGTAAGGGTCTTGACGAA 18042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268024521163688