Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3543 105 8e-18 >seq3543 Length=23122 Score = 105 bits (116), Expect = 8e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 ||||||||| || || || || || ||||| || ||||||||||||||||||||||| || Sbjct 19372 TACACCAATTGGTCCAACACCTGGTCCTCCGCCACCATGTGGAATACAGAATGTCTTGTG 19431 Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | || |||||||| ||||| |||||| |||| || | || | || || Sbjct 19432 AAGGTTGAGATGACAGACATCAGCACCAATCTCACCAGGCGAACACAACCCAATTTGAGC 19491 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| | ||| ||||| || | || || ||||| || | | |||||| || | ||| | Sbjct 19492 ATTCATATTGGCACCGTCCATGTAGACTTGACCGCCGTGCTGATGAACAATATCACA-AG 19550 Query 138362 CTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAAT 138415 | | | | || | || || |||||||| || ||| |||||||||||||| Sbjct 19551 CAGCCTTAATCTCTGGCTCGAATACACCGAATGTACTTGGGTATGTAATCATAAT 19605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578972301647120