Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1816 239 5e-58 >seq1816 Length=7458 Score = 239 bits (264), Expect = 5e-58 Identities = 1181/1854 (64%), Gaps = 67/1854 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| ||||| ||| || | || |||| || |||||||| | | Sbjct 4906 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 4964 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| |||||| | ||| ||||||| || || | || || ||||| || || || || Sbjct 4965 AGAACGTCCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 5024 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323 | | | ||||| ||| || |||||| | | || |||| ||||| | || | Sbjct 5025 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 5083 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | || ||| |||||||||||| | | ||| | || |||||||| || | | | Sbjct 5084 CACTTTTCTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGA 5143 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 ||||||| || | ||||| |||| || || | | ||||| ||||| || Sbjct 5144 AGGAGGATAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 5203 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 ||||| |||||||| | |||| || | | |||| | | || | Sbjct 5204 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 5263 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || ||| | || | || || | || ||||| || || || || ||| || Sbjct 5264 GTACCAACGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTA 5323 Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616 | || || | |||| || ||||| ||| ||| || ||||| | || Sbjct 5324 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 5379 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || ||| | | |||||||| || | ||| ||||| || | ||||| Sbjct 5380 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAA 5439 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | || | ||||| || | || |||||||||| || || ||||||||||| ||| Sbjct 5440 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 5499 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793 || || | | ||| | || | || || ||| | | || || | | || Sbjct 5500 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 5556 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850 | || || ||||||||||| ||||| | ||||| |||| ||||||| | Sbjct 5557 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 5616 Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 || ||| | |||| | ||||| | | |||||| | | || || ||||| Sbjct 5617 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACC 5673 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 |||| |||| ||||||||||||||||| || ||||||||||| ||||||||||| | Sbjct 5674 GGAAATCCATTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTC 5733 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || ||||| ||| | ||||| |||||| | || ||| | | ||||| Sbjct 5734 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 5793 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087 ||| || || ||||| || || || || |||| | ||| ||||| ||| Sbjct 5794 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 5850 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 | |||| |||| |||| ||||| || | || | | ||| || ||| | ||| Sbjct 5851 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 5910 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206 ||||||||| || | || ||||| ||| || ||||| ||| | || || Sbjct 5911 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 5969 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265 ||||||| | | | |||||||||||||| || |||| |||| || | || || Sbjct 5970 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-----CTTTTTTGGCTCTTCGA 6024 Query 76266 ----CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 ||||||| ||| |||||||||| | | || || ||||| ||||| || || Sbjct 6025 TTACCATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTAC 6084 Query 76322 CACGCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379 ||||| | || || |||| || | ||| | | ||| |||||||||| | Sbjct 6085 CACGCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACCT 6142 Query 76380 TTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA 76439 || || || || | || | || | ||||| | |||||||||| | || | ||| Sbjct 6143 ACGAAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCT 6201 Query 76440 AGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 | | | | ||||||||| | ||| || |||||| | | ||| | || ||| Sbjct 6202 ACCGACCTTTGGGACTGGGATAGCTTGAAGAAATCCATCAAACAACACGGTGTCCGCAAC 6261 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 ||| | | | || || |||||||||||| |||| | ||||| | ||| || || Sbjct 6262 AGTTTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAG 6321 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 ||||||||||||||||| | ||||||||| | | | | || || || || Sbjct 6322 TGCTTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAA 6381 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 |||| ||| || |||| || || | || || | ||||| | | ||| Sbjct 6382 GTTGTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATG 6441 Query 76679 AAGGA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGA 76734 ||| | | |||| | ||| |||||||| |||||||| || | | || |||| Sbjct 6442 AAGAACCGTATCATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGC 6497 Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGAC 76792 ||| |||||| || ||| || || ||||| | || | ||| | | || | Sbjct 6498 TGACATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAA 6555 Query 76793 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGG 76850 |||||||| ||||||||| ||| |||| | ||||| | | ||||| | |||| Sbjct 6556 ATGGCCGCTGATCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGA 6613 Query 76851 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCA 76910 || || || ||| |||| | |||| |||||| | || |||||| ||| |||| Sbjct 6614 AAGACCCCACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCA 6673 Query 76911 AAACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 | |||||||||||||| ||||| | | ||| | || ||| |||||||||| Sbjct 6674 AGACCGGAATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 6727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542709625280