Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 239 5e-58
>seq1816
Length=7458
Score = 239 bits (264), Expect = 5e-58
Identities = 1181/1854 (64%), Gaps = 67/1854 (4%)
Strand=Plus/Plus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| || |||| ||||| ||| || | || |||| || |||||||| | |
Sbjct 4906 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 4964
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
||| |||||| | ||| ||||||| || || | || || ||||| || || || ||
Sbjct 4965 AGAACGTCCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 5024
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323
| | | ||||| ||| || |||||| | | || |||| ||||| | || |
Sbjct 5025 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 5083
Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383
| || ||| |||||||||||| | | ||| | || |||||||| || | | |
Sbjct 5084 CACTTTTCTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGA 5143
Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443
||||||| || | ||||| |||| || || | | ||||| ||||| ||
Sbjct 5144 AGGAGGATAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 5203
Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503
||||| |||||||| | |||| || | | |||| | | || |
Sbjct 5204 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 5263
Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563
| || || ||| | || | || || | || ||||| || || || || ||| ||
Sbjct 5264 GTACCAACGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTA 5323
Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616
| || || | |||| || ||||| ||| ||| || ||||| | ||
Sbjct 5324 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 5379
Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676
|| ||||| || ||| | | |||||||| || | ||| ||||| || | |||||
Sbjct 5380 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAA 5439
Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736
| || | ||||| || | || |||||||||| || || ||||||||||| |||
Sbjct 5440 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 5499
Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793
|| || | | ||| | || | || || ||| | | || || | | ||
Sbjct 5500 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 5556
Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850
| || || ||||||||||| ||||| | ||||| |||| ||||||| |
Sbjct 5557 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 5616
Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910
|| ||| | |||| | ||||| | | |||||| | | || || |||||
Sbjct 5617 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACC 5673
Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970
|||| |||| ||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 5674 GGAAATCCATTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTC 5733
Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030
|| || || ||||| ||| | ||||| |||||| | || ||| | | |||||
Sbjct 5734 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 5793
Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087
||| || || ||||| || || || || |||| | ||| ||||| |||
Sbjct 5794 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 5850
Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147
| |||| |||| |||| ||||| || | || | | ||| || ||| | |||
Sbjct 5851 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 5910
Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206
||||||||| || | || ||||| ||| || ||||| ||| | || ||
Sbjct 5911 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 5969
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG- 76265
||||||| | | | |||||||||||||| || |||| |||| || | || ||
Sbjct 5970 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-----CTTTTTTGGCTCTTCGA 6024
Query 76266 ----CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321
||||||| ||| |||||||||| | | || || ||||| ||||| || ||
Sbjct 6025 TTACCATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTAC 6084
Query 76322 CACGCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACAT 76379
||||| | || || |||| || | ||| | | ||| |||||||||| |
Sbjct 6085 CACGCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACCT 6142
Query 76380 TTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA 76439
|| || || || | || | || | ||||| | |||||||||| | || | |||
Sbjct 6143 ACGAAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCT 6201
Query 76440 AGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498
| | | | ||||||||| | ||| || |||||| | | ||| | || |||
Sbjct 6202 ACCGACCTTTGGGACTGGGATAGCTTGAAGAAATCCATCAAACAACACGGTGTCCGCAAC 6261
Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558
||| | | | || || |||||||||||| |||| | ||||| | ||| || ||
Sbjct 6262 AGTTTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAG 6321
Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618
||||||||||||||||| | ||||||||| | | | | || || || ||
Sbjct 6322 TGCTTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAA 6381
Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678
|||| ||| || |||| || || | || || | ||||| | | |||
Sbjct 6382 GTTGTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATG 6441
Query 76679 AAGGA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGA 76734
||| | | |||| | ||| |||||||| |||||||| || | | || ||||
Sbjct 6442 AAGAACCGTATCATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGC 6497
Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGAC 76792
||| |||||| || ||| || || ||||| | || | ||| | | || |
Sbjct 6498 TGACATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAA 6555
Query 76793 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGG 76850
|||||||| ||||||||| ||| |||| | ||||| | | ||||| | ||||
Sbjct 6556 ATGGCCGCTGATCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGA 6613
Query 76851 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCA 76910
|| || || ||| |||| | |||| |||||| | || |||||| ||| ||||
Sbjct 6614 AAGACCCCACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCA 6673
Query 76911 AAACCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964
| |||||||||||||| ||||| | | ||| | || ||| ||||||||||
Sbjct 6674 AGACCGGAATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 6727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596542709625280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |