Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1816 168 2e-36 seq3071 113 1e-19 seq3087 100 8e-16 seq2667 100 8e-16 >seq1816 Length=7458 Score = 168 bits (186), Expect = 2e-36 Identities = 573/880 (65%), Gaps = 17/880 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| || ||||| || || || |||||||| | ||||| ||||| Sbjct 5778 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 5719 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || |||| || ||||||||||| || ||| |||| |||| ||||| | || || Sbjct 5718 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGC 5659 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | |||| || || |||| ||| |||||| Sbjct 5658 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 5599 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | ||||| | ||| ||| | || || || || |||| || ||||| Sbjct 5598 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 5541 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 || | || |||||| | || | |||| || | || ||||||| ||| || | Sbjct 5540 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 5483 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984 ||| ||| | ||||||||||| || | | | ||| || || | |||||| Sbjct 5482 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCGTGG 5424 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || || ||| | || ||||| ||||| | ||| Sbjct 5423 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5364 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || |||| | |||| ||||| || || || || | |||||| |||||||| || Sbjct 5363 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5304 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159 | |||||| || | || || ||||| | || ||||| || |||| ||||| ||||| Sbjct 5303 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 5246 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 | || | | ||||| | || |||||||| || | |||||| || ||| | Sbjct 5245 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 5186 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 || ||| | |||| ||||||| |||||| ||| || | ||| | || ||| Sbjct 5185 ATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGC 5126 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | || | | ||||||| |||||| ||| |||||||| | || || | | Sbjct 5125 ATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 5066 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399 | || || || |||||| | ||| ||||| | |||| | || ||||||| Sbjct 5065 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAA 5006 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 ||| | | || | ||| ||| ||||| ||||| ||| ||| |||||| | || Sbjct 5005 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTC 4946 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||||||| | || || || || || || ||||| || Sbjct 4945 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 4906 >seq3071 Length=13184 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | | Sbjct 5901 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 5842 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||||||||||| || |||||||| || |||||||| | | Sbjct 5841 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 5782 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||||| || ||||| || |||||||| | | |||| || ||| || || | Sbjct 5781 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 5722 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | || || | || || ||||| || || Sbjct 5721 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 5682 >seq3087 Length=24457 Score = 100 bits (110), Expect = 8e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || | Sbjct 7992 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 8051 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || | || | || | ||||||||||| ||| || ||||||| || ||||| ||| Sbjct 8052 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 8111 Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || || |||| ||||| || | | ||||| ||| |||| | |||||||| | Sbjct 8112 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 8169 Query 289205 TCTTACCTGTTCC 289217 | ||||| || || Sbjct 8170 TTTTACCGGTACC 8182 >seq2667 Length=50713 Score = 100 bits (110), Expect = 8e-16 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || |||||||||||| |||||||| || || || ||||| | |||||| | Sbjct 25242 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 25301 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955 || | | |||||| ||||| |||| || | ||| |||| | || ||||||||||| Sbjct 25302 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 25358 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| |||||||||||||| Sbjct 25359 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 25390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471749599267222