Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq475 127 2e-23
seq1611 111 2e-18
seq3071 95.1 1e-13
>seq475
Length=36277
Score = 127 bits (140), Expect = 2e-23
Identities = 128/164 (78%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
||||||| | |||| ||| | ||||| ||| | ||||||||| | || || || |
Sbjct 7449 GTGGGACCAAAGGTTTATGCAA-GTCGATCAGGATATGCTCTTTGAGCTTATTCTGGCTG 7507
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
| ||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||| ||||
Sbjct 7508 CTAACTACCTCAACATCAAGGCTCTTCTCGATCTTGGCTGCAAGACTGTTGCCAATATGA 7567
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
|||| |||||| | || | || ||||| ||||| || ||||||
Sbjct 7568 TCAAAGGCAAGACTCCAAAAGAAATCCGAAAGACATTCAACATC 7611
>seq1611
Length=6447
Score = 111 bits (122), Expect = 2e-18
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| |||||||||||||| ||||| |||| ||||| | || |||||| | || |||||
Sbjct 991 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 932
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || || || ||||| ||||| ||||||||||
Sbjct 931 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 883
>seq3071
Length=13184
Score = 95.1 bits (104), Expect = 1e-13
Identities = 168/243 (69%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || | | |||||| ||||| |||||||| | || |||||
Sbjct 5385 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 5444
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | |||||| ||| ||| || |||||||
Sbjct 5445 TTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACT 5504
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
|| || || |||||||| ||||||||||| || ||| | | ||||||||||| |
Sbjct 5505 --AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAA 5562
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || || || | |||| ||| || |||| |||||||| || ||||| ||
Sbjct 5563 GAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGA 5622
Query 868929 TGA 868931
|||
Sbjct 5623 TGA 5625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106843274753102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |