Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1611 111 2e-18 seq3071 89.7 8e-12 >seq1611 Length=6447 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || |||||||||||||| ||||| | |||||||| | || ||||||||||| ||||| Sbjct 991 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 932 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 931 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 883 >seq3071 Length=13184 Score = 89.7 bits (98), Expect = 8e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||| |||||||| | || ||||| |||||| | ||| |||||||| Sbjct 5411 CTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGC 5470 Query 793985 CGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCA 794042 | | ||| ||||||| || ||||||| || || || ||||||||||| || Sbjct 5471 AGACTTGTACACCTTCTCGTTACCAAGAGCGACT--AGGAGACGATCGGCGACGAACTCG 5528 Query 794043 ATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTG 794102 ||||| || ||| | | ||||||||||| | || || || || | |||| | Sbjct 5529 ATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTC 5588 Query 794103 ACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGA 794139 | || |||| |||||||| || ||||| |||||| Sbjct 5589 AAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGA 5625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915862813333034