Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1816 181 3e-40 seq3071 122 2e-22 >seq1816 Length=7458 Score = 181 bits (200), Expect = 3e-40 Identities = 381/562 (68%), Gaps = 7/562 (1%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| || | | || || || ||| |||||| |||||||||||| | || || Sbjct 5122 TCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTATTTATGATACCCTCAAG 5181 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 | |||| | || |||||||| ||||||| |||||| | || |||| || || Sbjct 5182 ACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGT 5241 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTT 110698 | | || ||| | ||||| | || ||| || |||| | | | || || ||| | Sbjct 5242 GCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAACGGCA-TCGTACCGATGCT 5300 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTC 110755 | |||| ||||| ||||||| | ||| || | |||||||| || | | ||| | Sbjct 5301 ACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGC 5360 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 |||||| ||||||| || |||||||| ||||| | || || ||| | || || || || Sbjct 5361 ATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAA 5420 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 || || || |||||| | || |||||| | || ||||| |||||||| | || Sbjct 5421 GAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGA 5480 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTT 110934 | | |||||||| |||||| || | || | | || ||| | || ||||| || || | Sbjct 5481 TCTCTTCATGAAGCGTGTTGAAAAGAACGCGGAT-TGGACACTAATGTGCCCCAATGAAT 5539 Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 |||||| | ||||||||||||| | |||||||||| || || || | ||||| | Sbjct 5540 GTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGA 5599 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 | ||||| | |||||| || ||| ||| | ||||||| | || || || Sbjct 5600 AGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGG 5659 Query 111055 CACAAGTTGAAACTGGAACTcc 111076 | ||| ||| || |||| ||| Sbjct 5660 CTCAAACTGAGACCGGAAATCC 5681 >seq3071 Length=13184 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| |||||||| || |||||| | | |||||||||||| | | ||| Sbjct 5901 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 5842 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | || || ||||||||| |||||| || || ||||| || | | Sbjct 5841 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 5782 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||||| ||||| ||||||||||| |||||| |||| ||| | || |||||| Sbjct 5781 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 5722 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | ||||||| | ||||||| | ||||| || || || Sbjct 5721 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 5682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186757967023366