Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 181 3e-40
seq3071 122 2e-22
>seq1816
Length=7458
Score = 181 bits (200), Expect = 3e-40
Identities = 381/562 (68%), Gaps = 7/562 (1%)
Strand=Plus/Plus
Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579
|| ||||| || | | || || || ||| |||||| |||||||||||| | || ||
Sbjct 5122 TCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTATTTATGATACCCTCAAG 5181
Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639
| |||| | || |||||||| ||||||| |||||| | || |||| || ||
Sbjct 5182 ACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGT 5241
Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTT 110698
| | || ||| | ||||| | || ||| || |||| | | | || || ||| |
Sbjct 5242 GCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAACGGCA-TCGTACCGATGCT 5300
Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTC 110755
| |||| ||||| ||||||| | ||| || | |||||||| || | | ||| |
Sbjct 5301 ACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGC 5360
Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815
|||||| ||||||| || |||||||| ||||| | || || ||| | || || || ||
Sbjct 5361 ATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAA 5420
Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875
|| || || |||||| | || |||||| | || ||||| |||||||| | ||
Sbjct 5421 GAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGA 5480
Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTT 110934
| | |||||||| |||||| || | || | | || ||| | || ||||| || || |
Sbjct 5481 TCTCTTCATGAAGCGTGTTGAAAAGAACGCGGAT-TGGACACTAATGTGCCCCAATGAAT 5539
Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994
|||||| | ||||||||||||| | |||||||||| || || || | ||||| |
Sbjct 5540 GTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGA 5599
Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054
| ||||| | |||||| || ||| ||| | ||||||| | || || ||
Sbjct 5600 AGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGG 5659
Query 111055 CACAAGTTGAAACTGGAACTcc 111076
| ||| ||| || |||| |||
Sbjct 5660 CTCAAACTGAGACCGGAAATCC 5681
>seq3071
Length=13184
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| ||||| |||||||| || |||||| | | |||||||||||| | | |||
Sbjct 5901 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 5842
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | || || ||||||||| |||||| || || ||||| || | |
Sbjct 5841 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 5782
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| | ||||||| ||||| ||||||||||| |||||| |||| ||| | || ||||||
Sbjct 5781 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 5722
Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006
| ||||||| | ||||||| | ||||| || || ||
Sbjct 5721 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 5682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186757967023366
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |