Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3109 93.3 1e-13 seq779 93.3 1e-13 seq1816 84.2 5e-11 >seq3109 Length=11437 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || ||||| ||||| | || || ||| ||||| Sbjct 9218 CAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 9277 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || || ||| Sbjct 9278 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAA 9337 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||| | ||||||||| | || | |||| |||||| || Sbjct 9338 CGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 9397 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || || ||||||||| Sbjct 9398 CAAAAGGAATCCACTCTTCAC 9418 >seq779 Length=13020 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || || |||||||||||| || || Sbjct 2954 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCAGAT 3013 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || || || || |||||| || Sbjct 3014 ACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAACAG 3073 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || |||||||||||||| ||||| || ||| | | ||||||||| | Sbjct 3074 CGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAACATT 3133 Query 206353 CAGAAAGAG 206361 ||||| ||| Sbjct 3134 CAGAAGGAG 3142 >seq1816 Length=7458 Score = 84.2 bits (92), Expect = 5e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 173079 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 173135 || ||||||||| || ||| |||| || |||||||| | ||||| || | || Sbjct 5730 GTTCTTTTGGTTGCTCTTCTTGTTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 5674 Query 173136 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 173195 ||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | | Sbjct 5673 GGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 5614 Query 173196 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 173255 |||| ||||| || || || ||||||||||| |||| || || | || || | || Sbjct 5613 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 5554 Query 173256 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 173315 | | || ||| ||| || || || | || |||||| | | | || || | Sbjct 5553 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 5494 Query 173316 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 173351 |||||||||||| || | | |||| | || ||||| Sbjct 5493 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 5458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181766197663126