Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq3109 93.3 1e-13
seq779 93.3 1e-13
seq1816 84.2 5e-11
>seq3109
Length=11437
Score = 93.3 bits (102), Expect = 1e-13
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| ||||| || ||||| ||||| | || || ||| |||||
Sbjct 9218 CAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 9277
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || ||||| || || |||
Sbjct 9278 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAA 9337
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||||||||| ||||| | ||||||||| | || | |||| |||||| ||
Sbjct 9338 CGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 9397
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
|| || || || |||||||||
Sbjct 9398 CAAAAGGAATCCACTCTTCAC 9418
>seq779
Length=13020
Score = 93.3 bits (102), Expect = 1e-13
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || || || |||||||||||| || ||
Sbjct 2954 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCAGAT 3013
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||||||||| || || || || |||||| ||
Sbjct 3014 ACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAACAG 3073
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||| || |||||||||||||| ||||| || ||| | | ||||||||| |
Sbjct 3074 CGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAACATT 3133
Query 206353 CAGAAAGAG 206361
||||| |||
Sbjct 3134 CAGAAGGAG 3142
>seq1816
Length=7458
Score = 84.2 bits (92), Expect = 5e-11
Identities = 185/276 (67%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 173079 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 173135
|| ||||||||| || ||| |||| || |||||||| | ||||| || | ||
Sbjct 5730 GTTCTTTTGGTTGCTCTTCTTGTTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 5674
Query 173136 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 173195
||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | |
Sbjct 5673 GGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 5614
Query 173196 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 173255
|||| ||||| || || || ||||||||||| |||| || || | || || | ||
Sbjct 5613 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 5554
Query 173256 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 173315
| | || ||| ||| || || || | || |||||| | | | || || |
Sbjct 5553 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 5494
Query 173316 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 173351
|||||||||||| || | | |||| | || |||||
Sbjct 5493 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 5458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181766197663126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |