Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq3109 86.0 6e-12
seq779 86.0 6e-12
>seq3109
Length=11437
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || || ||||| | || || ||| | ||||| |||| || ||| ||
Sbjct 9214 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 9273
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| ||||| | || || || || || || ||||| || || || |||||
Sbjct 9274 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 9333
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||| | || || | || |||||| ||||||||||||| | | | ||| |||||
Sbjct 9334 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 9393
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| ||||| |||||||| |||| || ||
Sbjct 9394 CATCCAAAAGGAATCCACTCTTCACTTGGT 9423
>seq779
Length=13020
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
|| || |||||||| || || ||||| ||| | | || | || || ||||||||||||
Sbjct 2588 GACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAACAACTCGAA 2647
Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||| | | | | ||||| ||||| || ||||||||||||||| |||| || |||
Sbjct 2648 GATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCACTTGGTG 2704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445074337369920
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |