Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3109 86.0 6e-12 seq779 86.0 6e-12 >seq3109 Length=11437 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | || || ||| | ||||| |||| || ||| || Sbjct 9214 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 9273 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || || || || || ||||| || || || ||||| Sbjct 9274 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 9333 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | || || | || |||||| ||||||||||||| | | | ||| ||||| Sbjct 9334 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 9393 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| |||||||| |||| || || Sbjct 9394 CATCCAAAAGGAATCCACTCTTCACTTGGT 9423 >seq779 Length=13020 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || || |||||||| || || ||||| ||| | | || | || || |||||||||||| Sbjct 2588 GACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAACAACTCGAA 2647 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||| | | | | ||||| ||||| || ||||||||||||||| |||| || ||| Sbjct 2648 GATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCACTTGGTG 2704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445074337369920