Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3071 120 4e-21 >seq3071 Length=13184 Score = 120 bits (132), Expect = 4e-21 Identities = 210/300 (70%), Gaps = 13/300 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| || || ||||| || || ||| ||||| Sbjct 6287 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACT 6229 Query 1455835 TCG----GCGCCGACACGGTCCACTGGG-TGTCG--CTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| | ||| | | || | || || |||||| ||||| Sbjct 6228 TGTCAAAGGACCTTCACGAT----TGGAATAACAAACTCAATGATGATGAGCGCTATTTC 6173 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||| || || ||| || ||| || || || ||||||||| | Sbjct 6172 ATCTCTCACGTCCTCGCATTCTT-CGCAGCATCCGACGGAATAGTCAACGAGAACCTTGT 6114 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | || || ||| | || ||||| |||| || ||||| ||||| || Sbjct 6113 CGAGCGCTTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAAT 6054 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| ||||| ||||| ||||| ||||| || ||| | ||||| Sbjct 6053 TATGATGGAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGA 5994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177463394672172