Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 277 2e-69
seq3071 104 3e-17
>seq1816
Length=7458
Score = 277 bits (306), Expect = 2e-69
Identities = 1146/1779 (64%), Gaps = 39/1779 (2%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| |||||||| |||| |||||||| | ||||| || |||||||| ||||| || |||
Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| | |||| ||| ||||||||| || | ||| | || || ||
Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
||||| ||||| ||||| || || | || || || | ||| || ||||||| | |
Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||||| ||| ||||| | ||||| ||| ||||| ||| |||||| |
Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489
Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | | |||||||| || |||||||| | || || ||||| || | || |
Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| ||| | || | | | | || || || ||||| | ||| ||||| |||
Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| || || | ||||| ||| || ||| || |||||||| | | || || ||
Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309
Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849
|||||||||| || || || | ||||||||||| || || | ||||| || | | |||
Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250
Query 68850 ATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908
||| | |||| | |||| || | | ||| |||||||| || | ||| |||
Sbjct 6249 GTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191
Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968
||| | ||||||||| || || || || ||| || | || || ||||| |
Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131
Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCT-AATGCACCGTAATAAATTGTTTC 69026
|| || | ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 6130 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073
Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA- 69084
||| || | | ||||| | |||| ||||| | || ||||| |||| || ||
Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 6015
Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144
| ||| ||||| || | || ||||| || | | ||||||||| ||| | ||| |
Sbjct 6014 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 5956
Query 69145 CTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203
||||| | | ||||| | || || || || || || || || || || | |||| |||
Sbjct 5955 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 5896
Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA----CAA 69259
|| |||| | || || | || || | ||||| | ||| || | | ||
Sbjct 5895 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 5836
Query 69260 ACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317
| || || || || | || || | ||||| || || |||| | | ||
Sbjct 5835 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 5776
Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377
|| | || ||||| || | ||| | || || || || || | || || ||
Sbjct 5775 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 5716
Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437
||| ||||| || || ||||||||||| || || ||| | || || ||| | |||| ||
Sbjct 5715 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 5656
Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC--TCTTT 69494
|| ||| || | ||||| || || || ||||||| || || | || ||
Sbjct 5655 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTCTTGCGACCTCTACCTTCCTT 5599
Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554
||||| ||| || ||| || || || || | |||||| |||| ||||||||
Sbjct 5598 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 5539
Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATAG 69611
|||||| || ||||| | || ||| ||| | | ||| ||| || ||||| || ||
Sbjct 5538 TTCATTGGGGCACATTAGTGTCCA---ATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 5482
Query 69612 ATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670
||| |||||||| | || ||| || ||||| | || | |||||| || || |
Sbjct 5481 ATCCGGAATCCACAAGGC-ATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGT 5423
Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730
| ||| || || || ||||| | || ||| | ||||| || || ||||| | || |
Sbjct 5422 TCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAA 5363
Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790
| || || || || ||||| || || || | |||||| ||||||||||| | ||||
Sbjct 5362 ATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTC 5303
Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850
|||||||| | || || || || ||||| || || || | || || || | |
Sbjct 5302 GTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGG 5243
Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910
| || || | ||| ||||| || ||||| || |||||||||| | ||||||
Sbjct 5242 CACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 5183
Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970
|| | || ||||| ||||| || || ||||| || |||| | || || || ||
Sbjct 5182 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 5123
Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030
|| | || ||| || || || || | |||||| || ||||| |||||
Sbjct 5122 ATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 5063
Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATT 70089
|||| | || | || ||||| || ||||| || || ||||| ||| | |||||
Sbjct 5062 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATA 5004
Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128
|| | || |||||||| | ||| ||||| || ||||||
Sbjct 5003 CCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCT 4965
>seq3071
Length=13184
Score = 104 bits (114), Expect = 3e-17
Identities = 302/459 (66%), Gaps = 12/459 (3%)
Strand=Plus/Plus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
|||||| || || ||||| |||||||| | |||||||| || || || |||||| |
Sbjct 5375 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 5434
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAA 39429
| || || || |||||||| || || || || | | || || || | |||
Sbjct 5435 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTA-- 5492
Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCAC 39488
|| | | | | | ||| || || || || |||||| ||||||| ||| |
Sbjct 5493 -CCAAGAGCGACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC 5551
Query 39489 AATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA 39548
||||| || | ||| | || |||||||| || | || |||| |||||| || |
Sbjct 5552 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 5610
Query 39549 CGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTT 39606
| |||||||| || | || || || ||| | || || | ||| || ||
Sbjct 5611 CAGCCTCTGTGATGAC--ATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGA 5668
Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666
|| | | ||| |||||||| ||| || || ||||| | || | || || ||
Sbjct 5669 GAAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGA 5728
Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726
|| ||||| |||| ||| | |||||||| |||||||| || || | ||| || |||||
Sbjct 5729 GAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCC 5788
Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765
| ||||||||||| || || || ||||| ||||| ||
Sbjct 5789 ACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAG 5827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686877837585840
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