Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1816 277 2e-69 seq3071 104 3e-17 >seq1816 Length=7458 Score = 277 bits (306), Expect = 2e-69 Identities = 1146/1779 (64%), Gaps = 39/1779 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||| |||| |||||||| | ||||| || |||||||| ||||| || ||| Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| ||| ||||||||| || | ||| | || || || Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| ||||| || || | || || || | ||| || ||||||| | | Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| ||| ||||| | ||||| ||| ||||| ||| |||||| | Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| || |||||||| | || || ||||| || | || | Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || ||| | || | | | | || || || ||||| | ||| ||||| ||| Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | ||||| ||| || ||| || |||||||| | | || || || Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309 Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 |||||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250 Query 68850 ATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||| | |||| | |||| || | | ||| |||||||| || | ||| ||| Sbjct 6249 GTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||||||||| || || || || ||| || | || || ||||| | Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCT-AATGCACCGTAATAAATTGTTTC 69026 || || | ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 6130 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA- 69084 ||| || | | ||||| | |||| ||||| | || ||||| |||| || || Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 6015 Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 | ||| ||||| || | || ||||| || | | ||||||||| ||| | ||| | Sbjct 6014 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 5956 Query 69145 CTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203 ||||| | | ||||| | || || || || || || || || || || | |||| ||| Sbjct 5955 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 5896 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA----CAA 69259 || |||| | || || | || || | ||||| | ||| || | | || Sbjct 5895 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 5836 Query 69260 ACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317 | || || || || | || || | ||||| || || |||| | | || Sbjct 5835 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 5776 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 || | || ||||| || | ||| | || || || || || | || || || Sbjct 5775 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 5716 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 ||| ||||| || || ||||||||||| || || ||| | || || ||| | |||| || Sbjct 5715 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 5656 Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC--TCTTT 69494 || ||| || | ||||| || || || ||||||| || || | || || Sbjct 5655 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTCTTGCGACCTCTACCTTCCTT 5599 Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 ||||| ||| || ||| || || || || | |||||| |||| |||||||| Sbjct 5598 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 5539 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATAG 69611 |||||| || ||||| | || ||| ||| | | ||| ||| || ||||| || || Sbjct 5538 TTCATTGGGGCACATTAGTGTCCA---ATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 5482 Query 69612 ATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 ||| |||||||| | || ||| || ||||| | || | |||||| || || | Sbjct 5481 ATCCGGAATCCACAAGGC-ATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGT 5423 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 | ||| || || || ||||| | || ||| | ||||| || || ||||| | || | Sbjct 5422 TCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAA 5363 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || || || ||||| || || || | |||||| ||||||||||| | |||| Sbjct 5362 ATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTC 5303 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 |||||||| | || || || || ||||| || || || | || || || | | Sbjct 5302 GTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGG 5243 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | || || | ||| ||||| || ||||| || |||||||||| | |||||| Sbjct 5242 CACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 5183 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 || | || ||||| ||||| || || ||||| || |||| | || || || || Sbjct 5182 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 5123 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 || | || ||| || || || || | |||||| || ||||| ||||| Sbjct 5122 ATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 5063 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATT 70089 |||| | || | || ||||| || ||||| || || ||||| ||| | ||||| Sbjct 5062 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATA 5004 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || | || |||||||| | ||| ||||| || |||||| Sbjct 5003 CCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCT 4965 >seq3071 Length=13184 Score = 104 bits (114), Expect = 3e-17 Identities = 302/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || || ||||| |||||||| | |||||||| || || || |||||| | Sbjct 5375 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 5434 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAA 39429 | || || || |||||||| || || || || | | || || || | ||| Sbjct 5435 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTA-- 5492 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCAC 39488 || | | | | | ||| || || || || |||||| ||||||| ||| | Sbjct 5493 -CCAAGAGCGACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC 5551 Query 39489 AATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA 39548 ||||| || | ||| | || |||||||| || | || |||| |||||| || | Sbjct 5552 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 5610 Query 39549 CGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTT 39606 | |||||||| || | || || || ||| | || || | ||| || || Sbjct 5611 CAGCCTCTGTGATGAC--ATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGA 5668 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 || | | ||| |||||||| ||| || || ||||| | || | || || || Sbjct 5669 GAAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGA 5728 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 || ||||| |||| ||| | |||||||| |||||||| || || | ||| || ||||| Sbjct 5729 GAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCC 5788 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 | ||||||||||| || || || ||||| ||||| || Sbjct 5789 ACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAG 5827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877837585840