Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 214 2e-50
>seq1816
Length=7458
Score = 214 bits (236), Expect = 2e-50
Identities = 940/1469 (64%), Gaps = 49/1469 (3%)
Strand=Plus/Minus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||||||||| | ||||||||||||||||| || || ||| | ||||| | ||||
Sbjct 6351 GTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCT 6292
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
|||||||||||| || || | | | |||||| || | ||| | | |||||| ||
Sbjct 6291 GGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTT 6232
Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885
||| | ||||||||| | | | | ||| | || | ||||||| || | ||||
Sbjct 6231 CTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAA 6173
Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945
| | || | || | || || || || |||| ||||||| ||| | | ||| |
Sbjct 6172 GTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAA 6113
Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005
||| | || || | ||||| || || ||||| ||||| || || | |
Sbjct 6112 TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGT 6053
Query 111006 CCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAG 111060
|||||||||| ||| ||||||| || || | || |||| |||| || ||
Sbjct 6052 GCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAG 5998
Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-A 111119
|||||||||||| | | | ||||||| || || | ||| ||||| || ||| |
Sbjct 5997 ACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGA 5939
Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179
|||| || | || ||||||||| ||| | ||| || ||| | | || | |
Sbjct 5938 CGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCT 5879
Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGG 111236
| ||||| |||| |||| |||| | ||| ||||| ||| | |||| || |
Sbjct 5878 CGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAG 5822
Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296
| || || ||||| || || ||| ||||| | | ||| || | ||||||||
Sbjct 5821 CAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTG 5762
Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356
| || || ||||| || ||| || || | ||||||||||| |||||||||||||| |
Sbjct 5761 TGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATG 5702
Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416
|||||||||| |||||| | || | || ||||| || || | | |||||| | | ||
Sbjct 5701 CATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACC 5642
Query 111417 AAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGT 111473
||| | ||| | |||| ||| | | || ||| ||| || | |
Sbjct 5641 AAAGCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCAT 5585
Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGAC 111530
|||| ||||||||||| || || | || | | || || | | ||| || |
Sbjct 5584 AGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGC 5528
Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588
| | || | ||| | || | ||| ||||| ||||||||||| || || ||||||||
Sbjct 5527 ACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCA 5470
Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648
|| || | || ||||| | || | ||||| | || ||||| ||| | ||
Sbjct 5469 CAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTC 5410
Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708
|||||||| | | ||| |||||||| ||||||||||||||||| | || | |
Sbjct 5409 CAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGG 5353
Query 111709 ACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762
|||| ||| |||| | || || | || ||| || || || || ||||| ||
Sbjct 5352 ACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGG 5293
Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822
| || || | || | ||| || || || || | | |||| | |
Sbjct 5292 TACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCT 5233
Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882
|| |||| | |||||||| ||||| || ||||| ||||| | | || ||
Sbjct 5232 GTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGT 5173
Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942
|||| ||||| | || |||||||| | | || |||||||| || | |||
Sbjct 5172 ATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTG 5113
Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 112001
| | |||||||||||| ||| || || || | ||||| |||| || | | ||
Sbjct 5112 TGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGG 5054
Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061
|||| || ||| ||||| | | | || || || || ||||| || || | || |
Sbjct 5053 ACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAA 4994
Query 112062 CCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-G 112120
| ||||||| ||| | |||||| ||| | | |||||||| || |||| || |
Sbjct 4993 CACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACG 4934
Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
|| ||| ||||| |||| || |||||
Sbjct 4933 ATC-GCTCGAGGGTCTTGAATCCGAAGTA 4906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628003691457600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |