Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 140 4e-28
seq3071 109 7e-19
>seq1816
Length=7458
Score = 140 bits (154), Expect = 4e-28
Identities = 1115/1774 (63%), Gaps = 57/1774 (3%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
|||||||||| ||| | |||| | | |||||||||||||| || |||||||| |
Sbjct 6727 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 6668
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
|| ||||| | | |||||| || | | |||| | || || || ||||
Sbjct 6667 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 6608
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
| |||||| ||| || || || | ||| || ||||| || ||||| | || ||
Sbjct 6607 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 6549
Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042
|| ||| | || | ||||| || ||| |||| || ||| || ||| |||| ||
Sbjct 6548 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 6490
Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102
| || ||||| || || ||||| | || || | | |||||| | | |||
Sbjct 6489 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 6430
Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160
||| | || || | ||||||| | || ||| | | ||||| || ||
Sbjct 6429 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 6372
Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219
|| || | | || | ||| ||||| || | |||||||| ||||||||||| |||
Sbjct 6371 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 6313
Query 118220 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279
||| | ||||| | ||| |||||| ||||| || || | ||| | ||||| ||||
Sbjct 6312 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 6253
Query 118280 ACCCTTTTCCCTAATGCGTTCCTTGAGAGCG-TCCCAGTCGTA---GTTG--AGCTTTGT 118333
||| | || | ||| || ||| | ||| |||||||| | || | || | |
Sbjct 6252 ACCGTGTTGTTTGATGGATTTCTTCA-AGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAA 6194
Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393
|||||| ||||||| | || || || | || | || || || || | ||
Sbjct 6193 CTCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGT 6139
Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453
|||||| | ||| ||| || | || | || | || ||||| || ||
Sbjct 6138 CTCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAAT 6079
Query 118454 TGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG--G 118511
||||| || || || || | |||||| || || ||||| | | ||| |
Sbjct 6078 AGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAG 6019
Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571
| ||| || |||| || |||||||| ||||||| | || || ||||| | | |
Sbjct 6018 AGCCAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAA 5961
Query 118572 TTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630
|| ||| | || ||| ||||| || | || | || || | | | || | ||
Sbjct 5960 TTGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTT 5902
Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TT 118689
| || || || | || | || |||||||||| | |||| || | | ||| ||
Sbjct 5901 TCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATT 5845
Query 118690 CATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747
||| ||| | | || || || || || |||| ||||| || | |||||
Sbjct 5844 CATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGG 5785
Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807
||| ||| || | |||||| |||||||| || || || ||||||||| | ||||||
Sbjct 5784 GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTT 5725
Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867
||| || ||| |||| || |||||||||||||||||| |||| | || ||||| ||
Sbjct 5724 TTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGT 5665
Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG---GCTCG 118924
||| | || |||||| | | ||| | | ||| | ||| ||| |||
Sbjct 5664 TTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCT 5608
Query 118925 CCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984
|| || | ||| || | ||||| ||||||||||| || || | || | |
Sbjct 5607 ACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAA 5548
Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044
||| || | || ||||| | || | ||| | | || ||||| ||||||||
Sbjct 5547 CCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCAT 5488
Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104
|||||| || || ||||| | || |||| ||||| || ||| ||||||| | ||
Sbjct 5487 GAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCC 5428
Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164
|| || || | |||| || || | | ||| |||||||| || || || || ||
Sbjct 5427 GTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGAC 5368
Query 119165 CGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTT 119218
|| | || || | |||| ||| | |||| || || || |||||| ||
Sbjct 5367 TGCAAATGCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATT 5311
Query 119219 AAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGA 119276
|| || || ||||| || | ||| || | ||| | || || || || ||| || |
Sbjct 5310 GAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATG- 5252
Query 119277 GACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 119336
|| | |||| | || ||| |||| | ||||||||| || || || |||||
Sbjct 5251 CAC-CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATC 5193
Query 119337 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 119396
|| || | |||| | | || || ||||| || || |||| | | |||
Sbjct 5192 ATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATG 5133
Query 119397 AGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGC 119455
|||||||| || | || || || |||||||||||| ||| || || || | ||
Sbjct 5132 AGGAAGCATGATGAAAGCTG-TGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGC 5074
Query 119456 GTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514
||| |||| || | | |||||| || ||||||||| | | || || || |
Sbjct 5073 GTGTGTGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGT 5015
Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548
| ||||||||||| | | || ||||| | |||
Sbjct 5014 CACCGTGAATACCAACGGCAACACGCATGATCAT 4981
>seq3071
Length=13184
Score = 109 bits (120), Expect = 7e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087
|||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | ||
Sbjct 5694 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 5753
Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147
|||||||| | |||||| || | | ||||| ||| ||||||||| ||||| |||
Sbjct 5754 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 5813
Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGG 130175
|| || |||| ||||||| ||||||||
Sbjct 5814 GCAAAAGCAACCAGACGCTGAGCAAAGG 5841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618407324033360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |