Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1816 215 6e-51 seq3071 129 7e-25 >seq1816 Length=7458 Score = 215 bits (238), Expect = 6e-51 Identities = 1119/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||| ||||||| || ||| | |||||||| || || || || || | | Sbjct 4972 CCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCC 5031 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||||| | | || |||| ||||| | || || || || Sbjct 5032 ATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTACACTTTT 5090 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 | |||||||||||| | | || | || |||||||| || | | |||||||| Sbjct 5091 CTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGA 5150 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || | ||||| |||| || || | | ||||| ||||| || ||||| Sbjct 5151 TAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGG 5210 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | |||| || | | |||| | | || || || || Sbjct 5211 AGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAA 5270 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| | || | || || | || ||||| || || || || ||| || | || || Sbjct 5271 CGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGT 5330 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | |||| ||| ||||| | || | ||||||||||||||||| ||||| Sbjct 5331 CGACCAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCA 5387 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||| | | |||||||| || | || ||||| || | || || | || Sbjct 5388 CGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGC 5447 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| Sbjct 5448 CCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAA 5507 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCTGGTCTCTCCGATGCCGTGGG 104811 | ||||| | || | || || ||| | | ||||| | | |||| || Sbjct 5508 CGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGG 5564 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 || ||||||||||| || || | || ||| | |||||| | | | | || ||| Sbjct 5565 CGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACC 5622 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | ||| | | ||| | | |||||| || ||||||| ||||| || | ||| Sbjct 5623 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCA 5682 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||||||||| || || || ||| | ||||| || |||||||| | || || Sbjct 5683 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 5742 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || |||||| | || |||||||| | |||| | | | |||||| ||| Sbjct 5743 CGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGC 5802 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT-GA 105108 |||||| | || || || |||||||| | | |||||| | || | || || || Sbjct 5803 TGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGA 5861 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || |||| || ||||| ||||| || || || |||| | |||| | ||||| Sbjct 5862 TTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGA 5921 Query 105169 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | |||||||| ||| || | || ||| | | || || || || | Sbjct 5922 CATCAACTACTACCCCGTCCCAGAG-GCCAGAAAGAGCAATTTCCGTCATCGACCTATCG 5980 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | |||||||||| ||||| || |||| || | | ||| ||||||| || Sbjct 5981 CTGTCGGTGTTCAAGGTCTTGCCGATGCTTTTTTGGCTCTTCGATTACCATTTGAATCAC 6040 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||||| ||| | |||| | || || || || || || ||||| ||| |||| Sbjct 6041 CTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGACA 6099 Query 105348 -CGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 || ||| ||| | || |||| ||| | ||||| |||| || || || || | Sbjct 6100 TCGTCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACCTACGAAGGCTCACCTG 6157 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG-AC 105463 || | || | ||||||| |||||||||| || | | ||| | | | | | || Sbjct 6158 TCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTT-ACACCTACCGACCTTTGGGAC 6216 Query 105464 TGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| |||| | ||| || |||||| | | ||| | || |||||| | ||| | || Sbjct 6217 TGGGATAGCT-TGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGC 6275 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 ||| |||||||||||| |||| | ||||| | ||| || || ||||||||||| || Sbjct 6276 TCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATA 6335 Query 105583 CACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 ||| | |||||||| ||| | | | | || ||||| || |||| ||| | Sbjct 6336 CACTTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CC 6392 Query 105642 AT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCT 105696 || || | | || || || || || | ||||| | | |||||| | | | Sbjct 6393 ATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTAT 6452 Query 105697 CAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 ||| | ||| |||||||| |||||||| ||| | |||||| ||| || ||| Sbjct 6453 CATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGG 6508 Query 105756 AGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGA 105813 | ||| || || ||||| | || | ||| | | || | |||||||| || Sbjct 6509 CACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGA 6566 Query 105814 TCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACG 105871 ||||||| ||| |||| | ||||| | | ||||| | |||| || || || Sbjct 6567 TCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACA 6624 Query 105872 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 105931 ||| |||| | |||| ||||| | | ||||||| ||||||||| || || ||| Sbjct 6625 ATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGGAATG 6684 Query 105932 TATTACCTCCG 105942 || |||||||| Sbjct 6685 TACTACCTCCG 6695 >seq3071 Length=13184 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790 |||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| | Sbjct 5905 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 5846 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | |||||||| |||| || | || ||||| ||||||||| ||||||||| ||| Sbjct 5845 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 5787 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || ||| |||| | |||||||||||||| || | ||| | |||||| ||||| Sbjct 5786 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 5727 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||| ||||| ||||| ||||| || || ||||| Sbjct 5726 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 5694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583234509519440