Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 215 6e-51
seq3071 129 7e-25
>seq1816
Length=7458
Score = 215 bits (238), Expect = 6e-51
Identities = 1119/1751 (64%), Gaps = 57/1751 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| | ||| ||||||| || ||| | |||||||| || || || || || | |
Sbjct 4972 CCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCC 5031
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| ||||| ||| || |||||| | | || |||| ||||| | || || || ||
Sbjct 5032 ATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTACACTTTT 5090
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
| |||||||||||| | | || | || |||||||| || | | ||||||||
Sbjct 5091 CTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGA 5150
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
|| | ||||| |||| || || | | ||||| ||||| || |||||
Sbjct 5151 TAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGG 5210
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|||||||| | |||| || | | |||| | | || || || ||
Sbjct 5211 AGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAA 5270
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
||| | || | || || | || ||||| || || || || ||| || | || ||
Sbjct 5271 CGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGT 5330
Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634
| |||| ||| ||||| | || | ||||||||||||||||| |||||
Sbjct 5331 CGACCAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCA 5387
Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694
||| ||| | | |||||||| || | || ||||| || | || || | ||
Sbjct 5388 CGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGC 5447
Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754
||| ||||| |||| || | |||||||| ||||||||||||||| | ||||| |||
Sbjct 5448 CCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAA 5507
Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCTGGTCTCTCCGATGCCGTGGG 104811
| ||||| | || | || || ||| | | ||||| | | |||| ||
Sbjct 5508 CGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGG 5564
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869
|| ||||||||||| || || | || ||| | |||||| | | | | || |||
Sbjct 5565 CGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACC 5622
Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
| ||| | | ||| | | |||||| || ||||||| ||||| || | |||
Sbjct 5623 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCA 5682
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
| |||||||||||| || || || ||| | ||||| || |||||||| | || ||
Sbjct 5683 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 5742
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049
|| |||||| | || |||||||| | |||| | | | |||||| |||
Sbjct 5743 CGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGC 5802
Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT-GA 105108
|||||| | || || || |||||||| | | |||||| | || | || || ||
Sbjct 5803 TGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGA 5861
Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168
|| |||| || ||||| ||||| || || || |||| | |||| | |||||
Sbjct 5862 TTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGA 5921
Query 105169 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227
| || | |||||||| ||| || | || ||| | | || || || || |
Sbjct 5922 CATCAACTACTACCCCGTCCCAGAG-GCCAGAAAGAGCAATTTCCGTCATCGACCTATCG 5980
Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287
| |||||||||| ||||| || |||| || | | ||| ||||||| ||
Sbjct 5981 CTGTCGGTGTTCAAGGTCTTGCCGATGCTTTTTTGGCTCTTCGATTACCATTTGAATCAC 6040
Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347
||||| ||| | |||| | || || || || || || ||||| ||| ||||
Sbjct 6041 CTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGACA 6099
Query 105348 -CGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404
|| ||| ||| | || |||| ||| | ||||| |||| || || || || |
Sbjct 6100 TCGTCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACCTACGAAGGCTCACCTG 6157
Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG-AC 105463
|| | || | ||||||| |||||||||| || | | ||| | | | | | ||
Sbjct 6158 TCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTT-ACACCTACCGACCTTTGGGAC 6216
Query 105464 TGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522
||||| |||| | ||| || |||||| | | ||| | || |||||| | ||| | ||
Sbjct 6217 TGGGATAGCT-TGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGC 6275
Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582
||| |||||||||||| |||| | ||||| | ||| || || ||||||||||| ||
Sbjct 6276 TCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATA 6335
Query 105583 CACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
||| | |||||||| ||| | | | | || ||||| || |||| ||| |
Sbjct 6336 CACTTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CC 6392
Query 105642 AT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCT 105696
|| || | | || || || || || | ||||| | | |||||| | | |
Sbjct 6393 ATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTAT 6452
Query 105697 CAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755
||| | ||| |||||||| |||||||| ||| | |||||| ||| || |||
Sbjct 6453 CATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGG 6508
Query 105756 AGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGA 105813
| ||| || || ||||| | || | ||| | | || | |||||||| ||
Sbjct 6509 CACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGA 6566
Query 105814 TCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACG 105871
||||||| ||| |||| | ||||| | | ||||| | |||| || || ||
Sbjct 6567 TCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACA 6624
Query 105872 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 105931
||| |||| | |||| ||||| | | ||||||| ||||||||| || || |||
Sbjct 6625 ATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGGAATG 6684
Query 105932 TATTACCTCCG 105942
|| ||||||||
Sbjct 6685 TACTACCTCCG 6695
>seq3071
Length=13184
Score = 129 bits (142), Expect = 7e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790
|||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| |
Sbjct 5905 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 5846
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
| | |||||||| |||| || | || ||||| ||||||||| ||||||||| |||
Sbjct 5845 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 5787
Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
|| ||| |||| | |||||||||||||| || | ||| | |||||| |||||
Sbjct 5786 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 5727
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943
||| ||||| ||||| ||||| || || |||||
Sbjct 5726 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 5694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583234509519440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |