Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 179 4e-40
>seq1816
Length=7458
Score = 179 bits (198), Expect = 4e-40
Identities = 498/758 (66%), Gaps = 12/758 (2%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| | ||||| ||||||||||| | | | | | |||||| |||
Sbjct 4985 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 5044
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | || ||||| || |||||| | || || || ||| |||||||||
Sbjct 5045 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 5104
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| | ||| | || |||||||| | | |||||||| || || || || |
Sbjct 5105 CACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTA 5164
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
| || || || |||||| ||||| ||||| || | || ||||| ||| ||
Sbjct 5165 TTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCA 5224
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| ||||||| | || || ||| || || ||||| | || |
Sbjct 5225 ACATTCACAGAA--TCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 5282
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| ||||| || ||||| || || ||||| ||||| || | |||||| |||| |||||
Sbjct 5283 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 5342
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || || |||| || ||||| |||||||| || || | ||
Sbjct 5343 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 5402
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| || || || || ||| || || | ||||| | ||| |||||| || ||
Sbjct 5403 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 5462
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| ||||||||||||| ||||||||| | || || ||| ||| ||| ||| ||
Sbjct 5463 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 5522
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790
|||||||| || || || || || | | ||| || || || |||||| | | |
Sbjct 5523 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCT 5582
Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAGG 53846
||| || || | || | || | || | | |||| |||| || | ||
Sbjct 5583 CTATGAGAGTTATG-AG---AAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGC 5638
Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906
| ||| | | || ||| || || ||||| |||| || | |||| |||||||
Sbjct 5639 TTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCATTCATGCTTTACAAGG 5698
Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
|| | |||| ||||||||||||| |||||| |||||
Sbjct 5699 ATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGC 5736
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAG 55785
|||||| ||||| ||| || ||||||||| | || ||| | | || || | |||
Sbjct 6503 TCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAAT-TG-TTCAAATGGC 6560
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|||||||||||||| | | |||||||| || || ||||||| |||| | | ||
Sbjct 6561 CGCTGATCGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCC 6620
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
|| ||| |||| | | || ||||| || ||| ||||| ||| |||||||| ||
Sbjct 6621 CACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 6680
Query 55906 TATGTACTATCTGCGGACC 55924
|||||||| || || |||
Sbjct 6681 AATGTACTACCTCCGTACC 6699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547191334238800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |