Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq779 86.0 4e-12
>seq779
Length=13020
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/232 (69%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || ||| | ||||| || |||||| | || || ||| |
Sbjct 2951 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 3010
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| ||||| ||| || ||||| || ||| | || ||| |
Sbjct 3011 GATACCATTGACAAT--GTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACC 3068
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964
| || || || || ||||| ||||| || ||||| || | |||| || | || ||||
Sbjct 3069 AACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATG---GCAGAACTCTTTCTGATT 3125
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || || |||||||||||||| ||||| | ||| | ||||||||
Sbjct 3126 ACAACATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGG 3177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355846760514762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |