Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1816 340 3e-88 >seq1816 Length=7458 Score = 340 bits (376), Expect = 3e-88 Identities = 1168/1793 (65%), Gaps = 36/1793 (2%) Strand=Plus/Minus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||||||||| || | |||||| | | ||||| || |||||||| Sbjct 6741 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 6682 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||||| |||| ||| |||||||||| || | ||| | Sbjct 6681 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 6622 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || || ||||| ||||| || || || || | || || || | |||||| Sbjct 6621 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 6562 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||||| | ||| || ||||| ||| ||||| | || ||| ||| | ||||| Sbjct 6561 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 6502 Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| |||||| || | | |||||||| || || ||||||| || || ||||| Sbjct 6501 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTT 6442 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | || ||| ||| | ||| | | | | || || || ||||||| Sbjct 6441 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 6382 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| |||||||||| ||| || | |||| ||| || ||| || |||||||| | | Sbjct 6381 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 6322 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 || ||| || | |||||||| || || || |||||||| || || | ||||| Sbjct 6321 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 6262 Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | || ||| ||| | |||| | |||| || ||| ||| |||||||| || | Sbjct 6261 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 6203 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958 ||| ||| |||| | ||||||||| || || || | || || ||| || | Sbjct 6202 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 6144 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC-TCT-AACGCACCGT 76016 || || || || || || || | ||| | || |||| | | | || ||| ||| Sbjct 6143 TAGGTCTCATAGGTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGT 6086 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGA 76075 ||||| |||||||| || | | || || | |||| |||||| | ||||| || Sbjct 6085 GGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG- 6028 Query 76076 TAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 |||| || || | ||| ||||| || || || ||||| || | | | ||||||| ||| Sbjct 6027 TAATCGAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATG 5968 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 | |||| || || ||||| | ||||| || || || || || || || || Sbjct 5967 ACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTT 5908 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254 | ||||||||||| |||| | || || | || || | ||||| | |||| || Sbjct 5907 CAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTC 5848 Query 76255 TATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT 76308 ||| || | || || ||||| || || || | ||||| || || |||| Sbjct 5847 ATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATC 5788 Query 76309 AGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAG 76365 | |||| |||| | || || ||||| | ||| | || || || || Sbjct 5787 TGG---GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAG 5731 Query 76366 ATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGT 76425 || | |||||||||||| ||||| |||| ||||| ||||| | || ||| |||| || Sbjct 5730 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 5671 Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTA 76485 ||| | || | |||| ||| || | ||| | | ||||| || | || | Sbjct 5670 CTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGA 5613 Query 76486 TCGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATCA 76543 | || | || ||| || | | ||| | |||||| || || || | |||||| Sbjct 5612 CCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCA 5553 Query 76544 TCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGT 76603 |||| |||||||||||||| || ||||| | || ||| || | | | | ||| || Sbjct 5552 GCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGC 5493 Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663 ||||| |||||||| || ||||| | ||| || ||||| |||| | |||||| Sbjct 5492 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCC 5433 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || |||||| || || |||||||| | || ||| | ||||| || || ||| Sbjct 5432 TTGCCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGA 5373 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || | || | |||| || || || || || || || || | ||||| ||||||||| Sbjct 5372 TAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTA 5313 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || |||||| | ||| || | |||||||| || |||| || || || | || || Sbjct 5312 TTGAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTAT 5253 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 ||| ||||| || | ||| || || || ||||| || |||||||||| Sbjct 5252 GCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATC 5193 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 | |||||| || | || ||||| || || || |||||||| ||| |||| | || Sbjct 5192 ATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATG 5133 Query 76964 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCA 77023 || || || || | || || || || || || | |||||| || || Sbjct 5132 AGGAAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCG 5073 Query 77024 TGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-CC 77081 || ||||| |||| | || | || ||||| || ||||| | ||| || ||||| | Sbjct 5072 TGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGC-GCTCTCGATATCGTC 5014 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 | | ||||| || || || |||||||| | ||| ||||| || |||||| || Sbjct 5013 ACCG-TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCA 4962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712902264481920