Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 87.8 2e-12
>seq1268
Length=12646
Score = 87.8 bits (96), Expect = 2e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || ||||||||||| || ||| |||||||||| ||||||||||| || ||
Sbjct 6825 ATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGG 6766
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| ||||| || || || | ||||||||||| | ||| || || | ||
Sbjct 6765 AAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGG 6706
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391
|| ||||| || || |||||| || ||||| || ||
Sbjct 6705 TTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGC 6668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517514618426520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |