Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 102 8e-17
>seq1268
Length=12646
Score = 102 bits (112), Expect = 8e-17
Identities = 337/514 (66%), Gaps = 14/514 (3%)
Strand=Plus/Minus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
||||| |||| ||| | || ||||||||||| || || || ||| || || || |||
Sbjct 7434 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 7375
Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033
|| || || || || || | || | | ||| || || || | | |
Sbjct 7374 ATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACTAGAAGA 7315
Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAGTCG 16092
| ||| || || || || || ||||| ||| |||| ||| || || || | |||| |
Sbjct 7314 CGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAGT-G 7257
Query 16093 TACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151
|| |||||||| | || || |||| |||||| ||| |||| || ||| | |||| ||
Sbjct 7256 CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACAT 7197
Query 16152 C--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206
| || | || | || || ||||||| || | ||| || | || |||||
Sbjct 7196 CTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCACGC 7142
Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266
||||||| ||| || ||||| || | | ||| || || ||||| ||||| | || |
Sbjct 7141 GAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGC 7082
Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326
||| || || ||||| | |||||| || | ||| ||||| || ||||| || ||
Sbjct 7081 CATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCC 7022
Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386
|||||||| |||||||| | | || | || | |||| | ||| | |||||||
Sbjct 7021 CTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAATCCA 6962
Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420
| | |||| |||||||| | || || |||
Sbjct 6961 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 6928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511383785455480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |