Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1268 152 5e-32 seq576 107 2e-18 seq3874 86.0 6e-12 seq257 84.2 2e-11 >seq1268 Length=12646 Score = 152 bits (168), Expect = 5e-32 Identities = 205/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||| | || ||| | ||| || Sbjct 6539 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 6598 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| ||| ||| | | | || || | |||||| |||||||| Sbjct 6599 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 6658 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || ||||| || |||||| || ||||||||||| || |||||||| Sbjct 6659 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 6718 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || | ||||||| || ||||||||||| || || || ||| Sbjct 6719 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 6778 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| |||| || || ||||||||| || ||| Sbjct 6779 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATAC 6823 Score = 116 bits (128), Expect = 4e-21 Identities = 267/397 (67%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 |||| ||||| || || || || || |||||| ||||||| || ||||| | | Sbjct 6993 AGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCTTCTA 7052 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | || ||||||||||| || ||| | ||| | || || |||||| ||| |||||||||| Sbjct 7053 TCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCT 7112 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215 || | || || ||||| ||| |||||| || || | || ||| || ||| ||| | Sbjct 7113 CCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTCCCACTTGAAGCACC 7172 Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275 | || ||| | | ||| || || |||| || || || | ||||| || | Sbjct 7173 GTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCGAACAAGAAT 7232 Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCA 117333 || | ||||| || || || |||| || || || | || ||||| |||| ||| Sbjct 7233 TCTTGACCGAGGCTCTTCCTTGTGC-ACTTCTTGGCATGAA-CGCGAACTTGATGAAGCA 7290 Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393 ||||||||||||||| ||||| | || || ||| || | || ||| ||||| Sbjct 7291 ATACATCGAGTTCGTTGCCGATCGTCTTCTAGTCGCTCTTGGTAACGAGAAGGTGTACAA 7350 Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 | ||||||| | ||||| ||| | ||||||| Sbjct 7351 GTCTGCCAACCCATTCGACTTCATGGAGAACATCTCC 7387 >seq576 Length=13942 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| ||||| ||| ||| | | | | |||| | ||| Sbjct 11705 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG-TAAAG 11647 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| || || ||||| || ||| ||||||| || || | |||| ||| ||| Sbjct 11646 AGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGC 11587 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||| || || || | || ||| | | |||||||||||| || |||||| | || || Sbjct 11586 AAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 11527 Query 40891 CATCTAGT 40898 ||||| || Sbjct 11526 CATCTCGT 11519 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| | || ||||| | |||||| | | Sbjct 11437 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 11378 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||| || || |||| || ||||| | | Sbjct 11377 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 11318 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || ||||| || || || | |||||||| | ||||||||||||||| || | Sbjct 11317 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 11258 Query 40880 AGGCCACGCTGCATCTAGTGTTGCGC 40905 | |||| || || | ||| | ||| Sbjct 11257 AATCCACCCTTCACTTGGTGCTCCGC 11232 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || || ||||| | || || || | | Sbjct 11219 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 11160 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | || ||| || | || || ||||| ||||| ||||||| Sbjct 11159 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 11101 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || || || || || | ||||| || |||||||| Sbjct 11100 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 11041 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||| ||| |||| |||||| Sbjct 11040 CATCCAGAAAGAGTCCACACTGCAT 11016 >seq3874 Length=1130 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| | || |||||||| || |||| ||| ||||| || || || Sbjct 8 GACAAGGAGGGAATCCCACCTGATCAGCAACGTCTGATCTTCGCCGGCAAGCAACTCGAA 67 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | |||||||| ||||||||||||||| ||||| |||| || || Sbjct 68 GATGGACGCACCCTTTCCGACTACAACATCCAAAAGGAATCCACTCTTCA 117 >seq257 Length=33499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||||| ||||| || || || ||||| || ||||||||| | || ||||| || | || Sbjct 15460 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 15519 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | | ||||| || || | ||||| ||||| || ||| ||||||| || Sbjct 15520 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 15579 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 ||| | |||| ||| || || || || || |||| || ||||| ||||||||||| Sbjct 15580 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 15639 Query 40872 CCAGAAGG 40879 || |||| Sbjct 15640 TCAAAAGG 15647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515188357690640