Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq576 118 9e-22
seq3874 84.2 2e-11
>seq576
Length=13942
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || || |||||||| |||||||| ||||||| ||||| ||| ||
Sbjct 11238 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 11297
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||| ||||| |||||| |||| | ||| || ||||| ||||| || |||||||||||
Sbjct 11298 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 11357
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||| | ||||||||| | || | || ||
Sbjct 11358 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTT 11417
Query 118709 GCCGGTCAGAGTTTTTAC 118726
||| || ||||| || ||
Sbjct 11418 GCCAGTGAGAGTCTTGAC 11435
Score = 102 bits (112), Expect = 7e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| |||||||| |||||||||||||| ||||||| || || ||| || || |||
Sbjct 11525 TGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGT 11584
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| || ||| |||| | ||||| || || || || || |||||||| || ||| ||
Sbjct 11585 TTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTG 11644
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||| || || ||||||||||| ||| | || ||||||||
Sbjct 11645 CTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 11703
>seq3874
Length=1130
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || || || ||||| |||||||| ||| | ||||| ||| |||
Sbjct 123 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 64
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || || || ||| |||| ||||| |||||||| || || || |||||||||||
Sbjct 63 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTC 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433805079081988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |