Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 122 8e-23
seq576 98.7 9e-16
>seq1268
Length=12646
Score = 122 bits (134), Expect = 8e-23
Identities = 230/335 (69%), Gaps = 5/335 (1%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||||||||| || ||||| || ||||| | ||||| | ||| ||
Sbjct 6539 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 6598
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||| || ||||||| || | ||||| || |||| | |||| ||
Sbjct 6599 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 6658
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| |||||||| || || || |||||||| | ||||| |
Sbjct 6659 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 6718
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| ||| | | ||||| | ||||| ||||| || ||| | ||
Sbjct 6719 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 6778
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG-ACAACGA 57865
|| ||| | || || |||| || || || ||||||||||| ||| | |||| ||||
Sbjct 6779 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAAGCC 6838
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900
| | ||| || || ||||| || || || ||||
Sbjct 6839 CAACGAACATA-TCTCTTCAATGCAATTGAGACAA 6872
>seq576
Length=13942
Score = 98.7 bits (108), Expect = 9e-16
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| |||||||| || ||||| || ||||| | || || || ||||||||| |||
Sbjct 11437 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 11378
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| | || ||||||||| || | || || || || || ||| | |
Sbjct 11377 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 11318
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| |||||||| ||||| | ||||| | || ||||||| || ||||| |||||||
Sbjct 11317 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 11258
Query 31383 AATCGACTCTTCATCTGGTACT 31404
|||| || ||||| |||| ||
Sbjct 11257 AATCCACCCTTCACTTGGTGCT 11236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445739715308880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |