Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4565 87.8 4e-12 >seq4565 Length=7484 Score = 87.8 bits (96), Expect = 4e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| || || || | ||||||||| | || ||||| || || ||| || ||| Sbjct 5237 TGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTA 5178 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG- 94892 ||||||||||| ||||| ||||| || | | | | |||||||| || ||||| || Sbjct 5177 TCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGT 5118 Query 94893 GGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 | |||| ||| ||| || ||||| ||||| || || || || || | | || Sbjct 5117 GCTTGTG-GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATTTGTTGGA 5059 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| || | || || |||||| | | ||| || |||||||| || || || || Sbjct 5058 CATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAAC 4999 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTC 95039 |||||| ||||| | ||| || || || Sbjct 4998 ACGCATGATCATTTGCTGTGGACGTTC 4972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989523280053495