Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 87.8 4e-12
>seq4565
Length=7484
Score = 87.8 bits (96), Expect = 4e-12
Identities = 181/267 (68%), Gaps = 2/267 (1%)
Strand=Plus/Minus
Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833
|||| || || || | ||||||||| | || ||||| || || ||| || |||
Sbjct 5237 TGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTA 5178
Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG- 94892
||||||||||| ||||| ||||| || | | | | |||||||| || ||||| ||
Sbjct 5177 TCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGT 5118
Query 94893 GGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952
| |||| ||| ||| || ||||| ||||| || || || || || | | ||
Sbjct 5117 GCTTGTG-GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATTTGTTGGA 5059
Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012
||| || | || || |||||| | | ||| || |||||||| || || || ||
Sbjct 5058 CATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAAC 4999
Query 95013 ACGCATAATCATGTCCTGAGGGCGCTC 95039
|||||| ||||| | ||| || || ||
Sbjct 4998 ACGCATGATCATTTGCTGTGGACGTTC 4972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989523280053495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |