Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 269 3e-67
seq1268 104 3e-17
>seq4565
Length=7484
Score = 269 bits (298), Expect = 3e-67
Identities = 1141/1775 (64%), Gaps = 33/1775 (2%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 6734 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6675
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 6674 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6615
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 6614 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6555
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 6554 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6495
Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 6494 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6435
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 6434 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6375
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 6374 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6315
Query 65256 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 6314 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6256
Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 65373
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 6255 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6197
Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 65433
||| || || || | | || ||| | || || || || |
Sbjct 6196 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6137
Query 65434 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 65491
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 6136 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6079
Query 65492 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 65549
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 6078 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 6022
Query 65550 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 6021 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 5963
Query 65609 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 65667
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 5962 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 5903
Query 65668 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTAT-TACA 65723
||| |||| || || | || || | ||||| | || ||||| || | ||
Sbjct 5902 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 5843
Query 65724 AACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781
| ||||| | |||| || |||| ||||| || || |||| | | | |
Sbjct 5842 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 5783
Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841
||| | || || ||||| | ||| | ||||| || | || | ||| || |
Sbjct 5782 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 5723
Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901
|||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| |
Sbjct 5722 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 5663
Query 65902 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTT 65961
| | ||| | | ||| | | | || || || | || | |||| || ||
Sbjct 5662 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCTT 5605
Query 65962 CGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 66019
| ||| | | ||| | ||| |||||||| || | |||| |||| ||||||||
Sbjct 5604 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 5545
Query 66020 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 66079
||||| || ||||| | | ||| || ||| | | || || ||||| ||||||||
Sbjct 5544 TTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATC 5485
Query 66080 AGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 66138
|||||||| | || ||| || | ||| | || | ||| || || || ||||
Sbjct 5484 CGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCT 5426
Query 66139 TTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAA 66198
|| || || |||||| | | || ||| ||||| || || | || | || |
Sbjct 5425 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 5366
Query 66199 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 66258
| ||||| || |||||||| || || || | ||||||||| |||||||| |||||| |
Sbjct 5365 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 5306
Query 66259 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCAC 66318
||| || | || || ||||| |||| ||||| |||| ||| || ||| | ||||
Sbjct 5305 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 5246
Query 66319 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 66378
| || | ||| ||||| || || || || |||||||||| | || ||| |
Sbjct 5245 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 5186
Query 66379 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 66438
| | |||||||| || || || |||||||| ||| |||| | || || || || |
Sbjct 5185 TGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATG 5126
Query 66439 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 66498
| | || | || || || || | ||||| || ||||| || || |||
Sbjct 5125 AAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATT 5066
Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCT 66557
| | || | || ||||| |||||||| || || ||||| || | ||||| ||
Sbjct 5065 TGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACCA 5007
Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592
|| || |||||||| | ||| ||||| || | |||
Sbjct 5006 ACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4972
>seq1268
Length=12646
Score = 104 bits (114), Expect = 3e-17
Identities = 227/336 (68%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 36378 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 36436
||||||| || ||||| |||||||| ||| || | | || |||| ||||||||
Sbjct 6872 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 6814
Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496
|| | ||| || |||| || || ||||| || || ||||| || ||||||||
Sbjct 6813 ATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAG 6754
Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 36556
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 6753 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 6694
Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT----T 36612
|||||||| ||||| || || || | || || || ||||| || |
Sbjct 6693 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 6634
Query 36613 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 36672
| | ||| | ||||||||||| | | || || || | || | ||||| |||||||
Sbjct 6633 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 6575
Query 36673 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708
|| |||||||| |||||||| ||||| | ||||||
Sbjct 6574 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658133400130760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |