Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4565 269 4e-67 >seq4565 Length=7484 Score = 269 bits (298), Expect = 4e-67 Identities = 1149/1779 (65%), Gaps = 41/1779 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 6734 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6675 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| ||| ||||||||| || | ||| | || ||| || Sbjct 6674 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6615 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 6614 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6555 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 6554 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6495 Query 78958 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | || ||||| || |||||||| || || || | ||||| || | || | Sbjct 6494 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6435 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 6434 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6375 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | ||| || | |||| ||| || ||| || |||||||| | | || || || Sbjct 6374 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6315 Query 79135 AAAATTTGAGCAGTTGATGCC-GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | |||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 6314 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6256 Query 79194 GTATGATCTGATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACAACAT 79252 || | | |||| || | || || | ||||| |||||||| || | || ||| Sbjct 6255 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6197 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAA 79311 ||| | ||| ||||| || || || | || | ||| ||| ||| || ||||| Sbjct 6196 CCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCTCATAG 6138 Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCC-TCT-AATGCTCCGTAATAAATGGTTT 79369 | || || | || | || |||| | | | || || ||| ||||| |||| Sbjct 6137 GTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTT 6080 Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTAT-CAAATGGATAATTTAAGAG 79427 |||| || | | ||||| | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 6079 CGAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAG 6023 Query 79428 A-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486 | ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 6022 CCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 5964 Query 79487 AAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 |||| | | ||||| | || || || || || || || || || || | || ||| Sbjct 5963 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 5904 Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTA----C 79601 || | |||| || || | || || | ||||| | ||| || | | | Sbjct 5903 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 5844 Query 79602 AAACATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 | | ||||| | || | || |||| ||||| || || |||| | | | Sbjct 5843 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 5784 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | ||||| ||||| | || | |||||| || | || | ||| || Sbjct 5783 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 5724 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||||| ||||| || |||||||| ||||| ||||| ||| | || || ||| | |||| Sbjct 5723 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 5664 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCT 79838 || | ||| | | ||| | | | || || || | |||| | |||| || Sbjct 5663 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTACCTTCC 5607 Query 79839 TTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 ||| || | | ||| | ||| |||||||| || | ||||| | || |||||| Sbjct 5606 TTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGA 5547 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGA 79954 ||||| | || ||||| | | ||| || | | || ||| || || ||||| |||| Sbjct 5546 CATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGAAGA 5489 Query 79955 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||| |||||||| | || ||| || ||||| | || | || || || || Sbjct 5488 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 5430 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 |||||| || || |||||| | | || ||| | ||||| || || | || | || Sbjct 5429 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5370 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | | || || || |||||||| || || || | ||||||||| |||||||| ||||| Sbjct 5369 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5310 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | | ||| || | || || ||||| |||| ||||| |||| ||| || ||| || Sbjct 5309 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 5250 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 ||||| || | ||| ||||| || || || || |||||||||| | || ||| Sbjct 5249 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 5190 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 || | |||||||| || || || || ||||| || |||| | || || || || Sbjct 5189 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 5130 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || | || | || || || || | ||||| || ||||| || || Sbjct 5129 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 5070 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432 |||| | |||| || ||||| |||||||| || || ||||| || | ||||| Sbjct 5069 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 5011 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || || |||||||| | ||| ||||| || | ||| Sbjct 5010 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718225802633960