Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4565 269 4e-67
>seq4565
Length=7484
Score = 269 bits (298), Expect = 4e-67
Identities = 1149/1779 (65%), Gaps = 41/1779 (2%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 6734 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6675
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| | |||| ||| ||||||||| || | ||| | || ||| ||
Sbjct 6674 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6615
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 6614 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6555
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 6554 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6495
Query 78958 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 6494 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6435
Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 6434 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6375
Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134
| ||| || | |||| ||| || ||| || |||||||| | | || || ||
Sbjct 6374 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6315
Query 79135 AAAATTTGAGCAGTTGATGCC-GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193
| |||||||| || || || | ||||||||||| || || | ||||| || | | |||
Sbjct 6314 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6256
Query 79194 GTATGATCTGATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACAACAT 79252
|| | | |||| || | || || | ||||| |||||||| || | || |||
Sbjct 6255 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6197
Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAA 79311
||| | ||| ||||| || || || | || | ||| ||| ||| || |||||
Sbjct 6196 CCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCTCATAG 6138
Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCC-TCT-AATGCTCCGTAATAAATGGTTT 79369
| || || | || | || |||| | | | || || ||| ||||| ||||
Sbjct 6137 GTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTT 6080
Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTAT-CAAATGGATAATTTAAGAG 79427
|||| || | | ||||| | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 6079 CGAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAG 6023
Query 79428 A-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 6022 CCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 5964
Query 79487 AAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545
|||| | | ||||| | || || || || || || || || || || | || |||
Sbjct 5963 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 5904
Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTA----C 79601
|| | |||| || || | || || | ||||| | ||| || | | |
Sbjct 5903 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 5844
Query 79602 AAACATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659
| | ||||| | || | || |||| ||||| || || |||| | | |
Sbjct 5843 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 5784
Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719
|||| | ||||| ||||| | || | |||||| || | || | ||| ||
Sbjct 5783 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 5724
Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779
||||| ||||| || |||||||| ||||| ||||| ||| | || || ||| | ||||
Sbjct 5723 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 5664
Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCT 79838
|| | ||| | | ||| | | | || || || | |||| | |||| ||
Sbjct 5663 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTACCTTCC 5607
Query 79839 TTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896
||| || | | ||| | ||| |||||||| || | ||||| | || ||||||
Sbjct 5606 TTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGA 5547
Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGA 79954
||||| | || ||||| | | ||| || | | || ||| || || ||||| ||||
Sbjct 5546 CATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGAAGA 5489
Query 79955 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013
|||| |||||||| | || ||| || ||||| | || | || || || ||
Sbjct 5488 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 5430
Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073
|||||| || || |||||| | | || ||| | ||||| || || | || | ||
Sbjct 5429 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5370
Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133
| | || || || |||||||| || || || | ||||||||| |||||||| |||||
Sbjct 5369 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5310
Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193
| | ||| || | || || ||||| |||| ||||| |||| ||| || ||| ||
Sbjct 5309 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 5250
Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
||||| || | ||| ||||| || || || || |||||||||| | || |||
Sbjct 5249 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 5190
Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|| | |||||||| || || || || ||||| || |||| | || || || ||
Sbjct 5189 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 5130
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
|| | || | || || || || | ||||| || ||||| || ||
Sbjct 5129 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 5070
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432
|||| | |||| || ||||| |||||||| || || ||||| || | |||||
Sbjct 5069 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 5011
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
|| || || |||||||| | ||| ||||| || | |||
Sbjct 5010 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718225802633960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |