Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4565 212 8e-50 >seq4565 Length=7484 Score = 212 bits (234), Expect = 8e-50 Identities = 1140/1785 (64%), Gaps = 53/1785 (3%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || |||||||| || | ||||||||| | ||||| || |||||||| || || || ||| Sbjct 6734 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6675 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | |||| ||| |||||||| || | ||| || | | || || || Sbjct 6674 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTG-TGGGGTCTTTCAT 6616 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || || || || | ||||| || | || || ||||||| | Sbjct 6615 GTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAAC 6556 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| Sbjct 6555 AATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 6496 Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | | || ||||| || |||||||| || || || | || || || | || Sbjct 6495 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 6436 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||||||| | ||| | | | | || || || ||||| ||||| |||||||| Sbjct 6435 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 6376 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || ||| || | ||||| ||| || ||| || || ||||| | |||| || || Sbjct 6375 AGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACC 6316 Query 71217 CAAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| || || || | || |||||||| || || | | ||| || | | || Sbjct 6315 GAGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 6257 Query 71276 CATGT-----GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330 | ||| ||| |||||| ||| || || |||| | |||||| || | ||| Sbjct 6256 CGTGTTGTTTGAT-GGATTT---CTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGT 6202 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG-CGTATGATCCTGCATATGTAT 71389 ||| ||| || | || | ||| ||| | || || | Sbjct 6201 AACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCT 6143 Query 71390 CGTATGGT--CCTTCTTTTTCGGCTAGTTCACAACTCGCC-TCT-AATGCTCCATAATAA 71445 | || ||| || || || | | | || |||| | | | || || | | ||| Sbjct 6142 CATA-GGTACCCAACTCCTTAG-CAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAA 6087 Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATT 71504 || |||||||| || | | ||||| | |||| ||||| || |||||||| |||| Sbjct 6086 ATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATC 6029 Query 71505 TAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 ||||| | ||| || || || | |||||||| || | | ||||||||| || | Sbjct 6028 GAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGA 5969 Query 71564 TATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 ||| | |||| | | ||||| | || || || || || || || || || || | Sbjct 5968 AATT-GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAG 5910 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT 71679 |||||||| | |||| || || | || || | ||||| | || | ||| Sbjct 5909 TTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTC 5850 Query 71680 AT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736 || | || | | ||| || |||| || |||| ||||| || || |||| | Sbjct 5849 ATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGG 5790 Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796 | | |||| | |||||| ||||| | ||| | ||||| || | || | | Sbjct 5789 GCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTT 5730 Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856 || || ||||| ||||| || |||||||| ||||| || || ||| | || || ||| | Sbjct 5729 TGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTT 5670 Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTT 71915 |||| || | ||| | | ||| | | | || || || | |||| | |||| Sbjct 5669 TGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTA 5613 Query 71916 TTCTCTTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 || ||| || | | ||| | ||| |||||||| || | ||| | || Sbjct 5612 CCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAAC 5553 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 |||||||||||||| || ||||| | || ||| || | | || ||| || || |||| Sbjct 5552 CCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCA 5495 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTT 72090 | |||||||| |||||||| | || ||| || ||||| | || | || || || Sbjct 5494 TGAAGAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 5436 Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || |||||| || || |||||| | | || ||| | ||||| || || | || Sbjct 5435 CCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 5376 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 | || | | || || || |||||||| || || || | ||||||||| |||||||| Sbjct 5375 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTG 5316 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 |||||| | ||| || | || || ||||| ||| ||||| |||| ||| || Sbjct 5315 AAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 5256 Query 72271 CCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 ||| ||||||| || || ||| ||||| || || || || |||||||||| | Sbjct 5255 CCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATA 5196 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || ||| || | |||||||| || || || |||||||| ||| |||| | || || Sbjct 5195 GCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGG 5136 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || || || | || | || || || || | ||||| || ||||| Sbjct 5135 AAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGT 5076 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTG 72509 || || |||| | |||| || ||||| |||||||| || || ||||| || | Sbjct 5075 GTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG 5016 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || || || || || |||||||| | ||| ||||| || | ||| Sbjct 5015 -TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671099023929640