Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08-
07] 4,789 sequences; 36,003,868 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 129 9e-25
>seq1268
Length=12646
Score = 129 bits (142), Expect = 9e-25
Identities = 238/338 (70%), Gaps = 12/338 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||||||||| |||| || || ||||| | |||||| |||| ||
Sbjct 6539 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 6598
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| |||||||| |||||||| | | | | ||| |||||| | || || ||
Sbjct 6599 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 6658
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197
||| | | || ||||| || | ||||| ||||| |||||||| || | ||| || ||
Sbjct 6659 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGA-GCG 6717
Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255
||| | | |||| | || || |||| ||| ||||| ||||| |||||||| |||
Sbjct 6718 CTTCAGTGGTGAAGTTCA-AATCCCCGAGG-CTCGTTGCTTCTACGGTTTCCAAATTATG 6775
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-- 125313
|| |||||| | ||||| |||| |||||| || || || | |||||| || |
Sbjct 6776 ATGGAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAA 6835
Query 125314 -CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350
| ||||| |||| || ||||| || ||||| || ||
Sbjct 6836 GCCCAACG--AACATAT-CTCTTCAATGCAATTGAGAC 6870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741014838343640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |