Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1268 129 9e-25 >seq1268 Length=12646 Score = 129 bits (142), Expect = 9e-25 Identities = 238/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| || || ||||| | |||||| |||| || Sbjct 6539 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 6598 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||||| |||||||| | | | | ||| |||||| | || || || Sbjct 6599 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 6658 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||| | | || ||||| || | ||||| ||||| |||||||| || | ||| || || Sbjct 6659 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGA-GCG 6717 Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||| | | |||| | || || |||| ||| ||||| ||||| |||||||| ||| Sbjct 6718 CTTCAGTGGTGAAGTTCA-AATCCCCGAGG-CTCGTTGCTTCTACGGTTTCCAAATTATG 6775 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-- 125313 || |||||| | ||||| |||| |||||| || || || | |||||| || | Sbjct 6776 ATGGAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAA 6835 Query 125314 -CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | ||||| |||| || ||||| || ||||| || || Sbjct 6836 GCCCAACG--AACATAT-CTCTTCAATGCAATTGAGAC 6870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741014838343640