Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242985.1_202017-08- 07] 4,789 sequences; 36,003,868 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq576 82.4 6e-11 >seq576 Length=13942 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||||||||||| |||||||||||||||| | || | ||||| Sbjct 10782 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 10841 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || || ||||| || ||| || | || |||||||| Sbjct 10842 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 10901 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | |||||||| | || ||| || | ||| ||||| || Sbjct 10902 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 10961 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| || || || |||||||| Sbjct 10962 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 10991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421226613278789